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  1. Transcript 'KH2012:KH.C2.348.v3....'

Transcript Model

Transcript Id

KH2012:KH.C2.348.v3.R.ND3-3

Possible name(s)

NCOA7; OXR1; TLDC2

Gene model

KH2012:KH.C2.348

Location

KhC2 [5,982,682 / 5,995,454]

Sequences

Amino acid sequence

Length: 378

>KH.C2.348.v3.R.ND3-3
LSVGRVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLN
KLTSSYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKK
FQDLLVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGK
QPRTRMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGC
EKFGIMCNLSLITSVSMFCDKGCSSTSKIPEPPKPKDENNTPPHDGQLVDISSDSTPTIT
PTLPTNQEAQKSPTGQSETSDKEEKVTTRAEVKLKEEFPFLHSVVKSVEEFFPDEETNQS
GLGSPAQIMLKSVATSSE

Nucleotide sequence

Length: 1,731

>KH2012:KH.C2.348.v3.R.ND3-3
CTTGTACGTATTTAAACTTTATACTGATTTTAAGGCGTGAAAAATAATACATATAAGAAA
GTCATAATTAAGCGTAGGTCGTGTTTGGTGCTGTAAAAACATGTTTTCGACCTGTAGCAG
CCATAATGGAAACAGAAAATCATCTCAACCTGCAGGGACCATTCAATACAACGTTGGGAA
CAGAGACACTTTAAGAAGCATTGCGGTTAACTTTAACACTACCCCTTCAGCGATTATGAA
GTTAAACAAACTAACGTCAAGTTACATTTTCCCTGAACAAGTTTTATTTGTCCCGGAGAC
GAATATTTTGAAACCAACAGTAGAACAAGTGTCCCAAAACTCGGGAACAAATTTTGACGG
AGATTTTTCCTTCCTGGCTCCTTTGTCTGCATCACCTGGTCAACTTGACTTCTCAAAACC
AAAGAAGTTCCAGGATTTGCTGGTAGTTTCCACACAAGAGGATATTAAAGATGCAAACAG
TAATTCAAAACTGCTAAGAGACATGGGAGCAGACACCAACAAACCAGAGGTTACAACAGA
GACTCCAGTAAGCCCCACTATAACAAGAGGTATCTCCCAAACATCGGACACAAGTGTGGA
AGGTAAACAACCTCGTACACGAATGTTTTCAACCGAGTCCGAACCATTTGAGGAAAACTT
TATAAAGATGACTGTACGATATATTACCTCTACTCAGGAAACTGTTGAAGGTGTTCTTCT
CGTCACACCGACCTCAATAATGTTCGATCCTGATGCAAACGATCCACTTGCTATTCTACA
TGGGTGCGAAAAGTTTGGAATCATGTGTAACTTGTCTCTAATTACAAGTGTTTCCATGTT
CTGTGATAAAGGATGCAGTAGTACAAGCAAAATCCCGGAACCTCCGAAACCAAAAGACGA
AAACAACACCCCACCACACGATGGCCAACTTGTGGATATCTCGTCAGATTCAACGCCCAC
GATCACGCCCACTTTACCGACCAATCAGGAGGCTCAAAAATCCCCAACCGGCCAATCAGA
GACCTCGGATAAAGAAGAAAAGGTCACGACACGAGCAGAGGTTAAATTGAAAGAAGAATT
CCCGTTTCTTCACTCGGTTGTCAAGTCTGTTGAAGAATTTTTCCCCGATGAAGAAACGAA
CCAATCAGGTCTCGGATCCCCGGCACAGATCATGTTGAAATCGGTAGCGACATCTAGCGA
GTAACTGAACGTAACCTGAAAATCATTGTTCTGCCACCAAATATTTTGGCTTTTACCGGA
TAACGATATCAAATTTAGTTTGTGGGTTTAATGTTACAAACTATACAACGTTTTTATAAT
GATAACTTTTTATGAAACGTATAATTAAATTAAGACGTATTTCAACCTATTTTTGCACAT
CTAATACAAACGTAACATTAATTATTTTTTTGTCATGGAATATGTACCCGGGAAATTCCC
TAAAGTGCGAATCTTGGTTGTTTTATTGTTTGTTCATAATCGACTTTTGGTCAAACACAC
CGGGTGTACCTTGTCTGTTGTTCGCTCTGTGACGTCACTGTCGCGATTGTTGCTCCTGTG
TTACGAAAACATGGTTCGATTATGCCGCGTGTGCAACTTCATGTAGCAACTGACGTCATA
TTGGATTGCTTTTCAACCAAACAACATCGTTTGTGACGTACATAACATAACATACATTTT
ATTTATCTTTTGAAAACAGCGGCGATCATATTATTAAAACAACGAAAAGAA

InterProScan

Gene3D
LysM_dom_sf (IPR036779) - T[17-83] 2.0E-12
ProSiteProfiles
LysM_dom (IPR018392) - T[32-75] 10.646
CDD
LysM_dom (IPR018392) - T[32-75] 5.44939E-7
SMART
LysM_dom (IPR018392) - T[33-76] 4.0E-7
Pfam
LysM_dom (IPR018392) - T[34-76] 1.4E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
OXR1_HUMAN 53.521 % 87 1.53E-18
NCOA7_HUMAN 33.333 % 117 1.88E-28