Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.L18.61.v5....' > 
  2. Transcript 'KH2012:KH.S606.2.v2....' > 
  3. Transcript 'Boleac.CG.SB_v3.S810...' > 
  4. Transcript 'KH2012:KH.C10.183.v1...' > 
  5. Transcript 'KH2012:KH.C2.348.v3....'

Transcript Model

Transcript Id

KH2012:KH.C2.348.v3.A.SL6-3

Possible name(s)

NCOA7; OXR1; TLDC2

Gene model

KH2012:KH.C2.348

Location

KhC2 [5,982,682 / 5,995,382]

Sequences

Amino acid sequence

Length: 376

>KH.C2.348.v3.A.SL6-3
VGRVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLNKL
TSSYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKKFQ
DLLVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGKQP
RTRMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGCEK
FGIMCNLSLITSVSMFCDKGCSSTSKIPEPPKPKDENNTPPHDGQLVDISSDSTPTITPT
LPTNQEAQKSPTGQSETSDKEEKVTTRAEVKLKEEFPFLHSVVKSVEEFFPDEETNQSGL
GSPAQIMLKSVATSSE

Nucleotide sequence

Length: 1,659

>KH2012:KH.C2.348.v3.A.SL6-3
CGTAGGTCGTGTTTGGTGCTGTAAAAACATGTTTTCGACCTGTAGCAGCCATAATGGAAA
CAGAAAATCATCTCAACCTGCAGGGACCATTCAATACAACGTTGGGAACAGAGACACTTT
AAGAAGCATTGCGGTTAACTTTAACACTACCCCTTCAGCGATTATGAAGTTAAACAAACT
AACGTCAAGTTACATTTTCCCTGAACAAGTTTTATTTGTCCCGGAGACGAATATTTTGAA
ACCAACAGTAGAACAAGTGTCCCAAAACTCGGGAACAAATTTTGACGGAGATTTTTCCTT
CCTGGCTCCTTTGTCTGCATCACCTGGTCAACTTGACTTCTCAAAACCAAAGAAGTTCCA
GGATTTGCTGGTAGTTTCCACACAAGAGGATATTAAAGATGCAAACAGTAATTCAAAACT
GCTAAGAGACATGGGAGCAGACACCAACAAACCAGAGGTTACAACAGAGACTCCAGTAAG
CCCCACTATAACAAGAGGTATCTCCCAAACATCGGACACAAGTGTGGAAGGTAAACAACC
TCGTACACGAATGTTTTCAACCGAGTCCGAACCATTTGAGGAAAACTTTATAAAGATGAC
TGTACGATATATTACCTCTACTCAGGAAACTGTTGAAGGTGTTCTTCTCGTCACACCGAC
CTCAATAATGTTCGATCCTGATGCAAACGATCCACTTGCTATTCTACATGGGTGCGAAAA
GTTTGGAATCATGTGTAACTTGTCTCTAATTACAAGTGTTTCCATGTTCTGTGATAAAGG
ATGCAGTAGTACAAGCAAAATCCCGGAACCTCCGAAACCAAAAGACGAAAACAACACCCC
ACCACACGATGGCCAACTTGTGGATATCTCGTCAGATTCAACGCCCACGATCACGCCCAC
TTTACCGACCAATCAGGAGGCTCAAAAATCCCCAACCGGCCAATCAGAGACCTCGGATAA
AGAAGAAAAGGTCACGACACGAGCAGAGGTTAAATTGAAAGAAGAATTCCCGTTTCTTCA
CTCGGTTGTCAAGTCTGTTGAAGAATTTTTCCCCGATGAAGAAACGAACCAATCAGGTCT
CGGATCCCCGGCACAGATCATGTTGAAATCGGTAGCGACATCTAGCGAGTAACTGAACGT
AACCTGAAAATCATTGTTCTGCCACCAAATATTTTGGCTTTTACCGGATAACGATATCAA
ATTTAGTTTGTGGGTTTAATGTTACAAACTATACAACGTTTTTATAATGATAACTTTTTA
TGAAACGTATAATTAAATTAAGACGTATTTCAACCTATTTTTGCACATCTAATACAAACG
TAACATTAATTATTTTTTTGTCATGGAATATGTACCCGGGAAATTCCCTAAAGTGCGAAT
CTTGGTTGTTTTATTGTTTGTTCATAATCGACTTTTGGTCAAACACACCGGGTGTACCTT
GTCTGTTGTTCGCTCTGTGACGTCACTGTCGCGATTGTTGCTCCTGTGTTACGAAAACAT
GGTTCGATTATGCCGCGTGTGCAACTTCATGTAGCAACTGACGTCATATTGGATTGCTTT
TCAACCAAACAACATCGTTTGTGACGTACATAACATAACATACATTTTATTTATCTTTTG
AAAACAGCGGCGATCATATTATTAAAACAACGAAAAGAA

InterProScan

Gene3D
LysM_dom_sf (IPR036779) - T[15-81] 2.0E-12
CDD
LysM_dom (IPR018392) - T[30-73] 5.42032E-7
ProSiteProfiles
LysM_dom (IPR018392) - T[30-73] 10.646
SMART
LysM_dom (IPR018392) - T[31-74] 4.0E-7
Pfam
LysM_dom (IPR018392) - T[32-74] 1.4E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
OXR1_HUMAN 53.521 % 87 1.56E-18
NCOA7_HUMAN 33.333 % 116 2.02E-28