Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.348.v3.A.nonSL13-3

Possible name(s)

NCOA7; OXR1; TLDC2

Gene model

KH2012:KH.C2.348

Location

KhC2 [5,982,682 / 5,995,480]

Sequences

Amino acid sequence

Length: 378

>KH.C2.348.v3.A.nonSL13-3
LSVGRVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLN
KLTSSYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKK
FQDLLVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGK
QPRTRMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGC
EKFGIMCNLSLITSVSMFCDKGCSSTSKIPEPPKPKDENNTPPHDGQLVDISSDSTPTIT
PTLPTNQEAQKSPTGQSETSDKEEKVTTRAEVKLKEEFPFLHSVVKSVEEFFPDEETNQS
GLGSPAQIMLKSVATSSE

Nucleotide sequence

Length: 1,757

>KH2012:KH.C2.348.v3.A.nonSL13-3
AAGAGTCTTGATTATTGTGCTAAGGTCTTGTACGTATTTAAACTTTATACTGATTTTAAG
GCGTGAAAAATAATACATATAAGAAAGTCATAATTAAGCGTAGGTCGTGTTTGGTGCTGT
AAAAACATGTTTTCGACCTGTAGCAGCCATAATGGAAACAGAAAATCATCTCAACCTGCA
GGGACCATTCAATACAACGTTGGGAACAGAGACACTTTAAGAAGCATTGCGGTTAACTTT
AACACTACCCCTTCAGCGATTATGAAGTTAAACAAACTAACGTCAAGTTACATTTTCCCT
GAACAAGTTTTATTTGTCCCGGAGACGAATATTTTGAAACCAACAGTAGAACAAGTGTCC
CAAAACTCGGGAACAAATTTTGACGGAGATTTTTCCTTCCTGGCTCCTTTGTCTGCATCA
CCTGGTCAACTTGACTTCTCAAAACCAAAGAAGTTCCAGGATTTGCTGGTAGTTTCCACA
CAAGAGGATATTAAAGATGCAAACAGTAATTCAAAACTGCTAAGAGACATGGGAGCAGAC
ACCAACAAACCAGAGGTTACAACAGAGACTCCAGTAAGCCCCACTATAACAAGAGGTATC
TCCCAAACATCGGACACAAGTGTGGAAGGTAAACAACCTCGTACACGAATGTTTTCAACC
GAGTCCGAACCATTTGAGGAAAACTTTATAAAGATGACTGTACGATATATTACCTCTACT
CAGGAAACTGTTGAAGGTGTTCTTCTCGTCACACCGACCTCAATAATGTTCGATCCTGAT
GCAAACGATCCACTTGCTATTCTACATGGGTGCGAAAAGTTTGGAATCATGTGTAACTTG
TCTCTAATTACAAGTGTTTCCATGTTCTGTGATAAAGGATGCAGTAGTACAAGCAAAATC
CCGGAACCTCCGAAACCAAAAGACGAAAACAACACCCCACCACACGATGGCCAACTTGTG
GATATCTCGTCAGATTCAACGCCCACGATCACGCCCACTTTACCGACCAATCAGGAGGCT
CAAAAATCCCCAACCGGCCAATCAGAGACCTCGGATAAAGAAGAAAAGGTCACGACACGA
GCAGAGGTTAAATTGAAAGAAGAATTCCCGTTTCTTCACTCGGTTGTCAAGTCTGTTGAA
GAATTTTTCCCCGATGAAGAAACGAACCAATCAGGTCTCGGATCCCCGGCACAGATCATG
TTGAAATCGGTAGCGACATCTAGCGAGTAACTGAACGTAACCTGAAAATCATTGTTCTGC
CACCAAATATTTTGGCTTTTACCGGATAACGATATCAAATTTAGTTTGTGGGTTTAATGT
TACAAACTATACAACGTTTTTATAATGATAACTTTTTATGAAACGTATAATTAAATTAAG
ACGTATTTCAACCTATTTTTGCACATCTAATACAAACGTAACATTAATTATTTTTTTGTC
ATGGAATATGTACCCGGGAAATTCCCTAAAGTGCGAATCTTGGTTGTTTTATTGTTTGTT
CATAATCGACTTTTGGTCAAACACACCGGGTGTACCTTGTCTGTTGTTCGCTCTGTGACG
TCACTGTCGCGATTGTTGCTCCTGTGTTACGAAAACATGGTTCGATTATGCCGCGTGTGC
AACTTCATGTAGCAACTGACGTCATATTGGATTGCTTTTCAACCAAACAACATCGTTTGT
GACGTACATAACATAACATACATTTTATTTATCTTTTGAAAACAGCGGCGATCATATTAT
TAAAACAACGAAAAGAA

InterProScan

Gene3D	LysM_dom_sf (IPR036779) - T[17-83] 2.0E-12
ProSiteProfiles	LysM_dom (IPR018392) - T[32-75] 10.646
CDD	LysM_dom (IPR018392) - T[32-75] 5.44939E-7
SMART	LysM_dom (IPR018392) - T[33-76] 4.0E-7
Pfam	LysM_dom (IPR018392) - T[34-76] 1.4E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
OXR1_HUMAN	53.521 %	87	1.53E-18
NCOA7_HUMAN	33.333 %	117	1.88E-28