Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.348.v1.R.ND2-2

Possible name(s)

NCOA7; OXR1; TLDC2

Gene model

KH2012:KH.C2.348

Location

KhC2 [5,985,975 / 5,995,439]

Sequences

Amino acid sequence

Length: 280

>KH.C2.348.v1.R.ND2-2
LSVGRVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLN
KLTSSYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKK
FQDLLVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGK
QPRTRMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGC
EKFGIMCNLSLITSVSMFCDKGCSSTRKLLKVFFLSHRPQ

Nucleotide sequence

Length: 965

>KH2012:KH.C2.348.v1.R.ND2-2
ACTTTATACTGATTTTAAGGCGTGAAAAATAATACATATAAGAAAGTCATAATTAAGCGT
AGGTCGTGTTTGGTGCTGTAAAAACATGTTTTCGACCTGTAGCAGCCATAATGGAAACAG
AAAATCATCTCAACCTGCAGGGACCATTCAATACAACGTTGGGAACAGAGACACTTTAAG
AAGCATTGCGGTTAACTTTAACACTACCCCTTCAGCGATTATGAAGTTAAACAAACTAAC
GTCAAGTTACATTTTCCCTGAACAAGTTTTATTTGTCCCGGAGACGAATATTTTGAAACC
AACAGTAGAACAAGTGTCCCAAAACTCGGGAACAAATTTTGACGGAGATTTTTCCTTCCT
GGCTCCTTTGTCTGCATCACCTGGTCAACTTGACTTCTCAAAACCAAAGAAGTTCCAGGA
TTTGCTGGTAGTTTCCACACAAGAGGATATTAAAGATGCAAACAGTAATTCAAAACTGCT
AAGAGACATGGGAGCAGACACCAACAAACCAGAGGTTACAACAGAGACTCCAGTAAGCCC
CACTATAACAAGAGGTATCTCCCAAACATCGGACACAAGTGTGGAAGGTAAACAACCTCG
TACACGAATGTTTTCAACCGAGTCCGAACCATTTGAGGAAAACTTTATAAAGATGACTGT
ACGATATATTACCTCTACTCAGGAAACTGTTGAAGGTGTTCTTCTCGTCACACCGACCTC
AATAATGTTCGATCCTGATGCAAACGATCCACTTGCTATTCTACATGGGTGCGAAAAGTT
TGGAATCATGTGTAACTTGTCTCTAATTACAAGTGTTTCCATGTTCTGTGATAAAGGATG
CAGTAGTACAAGGAAACTGTTGAAGGTGTTCTTCTTGTCACACCGACCTCAATAATGTTC
GATCCTGATGCAAACGATCCACTTGCTATTCTACATGGGTGCGAAAAGTTTGGAATCATG
TGTAA

InterProScan

Gene3D	LysM_dom_sf (IPR036779) - T[17-83] 1.2E-12
ProSiteProfiles	LysM_dom (IPR018392) - T[32-75] 10.646
CDD	LysM_dom (IPR018392) - T[32-75] 3.95895E-7
SMART	LysM_dom (IPR018392) - T[33-76] 4.0E-7
Pfam	LysM_dom (IPR018392) - T[34-76] 9.1E-10

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
OXR1_HUMAN	53.521 %	87	3.59E-19
NCOA7_HUMAN	33.333 %	116	3.27E-29