Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.348.v1.A.SL10-2

Possible name(s)

NCOA7; OXR1; TLDC2

Gene model

KH2012:KH.C2.348

Location

KhC2 [5,985,975 / 5,995,377]

Sequences

Amino acid sequence

Length: 276

>KH.C2.348.v1.A.SL10-2
RVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLNKLTS
SYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKKFQDL
LVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGKQPRT
RMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGCEKFG
IMCNLSLITSVSMFCDKGCSSTRKLLKVFFLSHRPQ

Nucleotide sequence

Length: 903

>KH2012:KH.C2.348.v1.A.SL10-2
GTCGTGTTTGGTGCTGTAAAAACATGTTTTCGACCTGTAGCAGCCATAATGGAAACAGAA
AATCATCTCAACCTGCAGGGACCATTCAATACAACGTTGGGAACAGAGACACTTTAAGAA
GCATTGCGGTTAACTTTAACACTACCCCTTCAGCGATTATGAAGTTAAACAAACTAACGT
CAAGTTACATTTTCCCTGAACAAGTTTTATTTGTCCCGGAGACGAATATTTTGAAACCAA
CAGTAGAACAAGTGTCCCAAAACTCGGGAACAAATTTTGACGGAGATTTTTCCTTCCTGG
CTCCTTTGTCTGCATCACCTGGTCAACTTGACTTCTCAAAACCAAAGAAGTTCCAGGATT
TGCTGGTAGTTTCCACACAAGAGGATATTAAAGATGCAAACAGTAATTCAAAACTGCTAA
GAGACATGGGAGCAGACACCAACAAACCAGAGGTTACAACAGAGACTCCAGTAAGCCCCA
CTATAACAAGAGGTATCTCCCAAACATCGGACACAAGTGTGGAAGGTAAACAACCTCGTA
CACGAATGTTTTCAACCGAGTCCGAACCATTTGAGGAAAACTTTATAAAGATGACTGTAC
GATATATTACCTCTACTCAGGAAACTGTTGAAGGTGTTCTTCTCGTCACACCGACCTCAA
TAATGTTCGATCCTGATGCAAACGATCCACTTGCTATTCTACATGGGTGCGAAAAGTTTG
GAATCATGTGTAACTTGTCTCTAATTACAAGTGTTTCCATGTTCTGTGATAAAGGATGCA
GTAGTACAAGGAAACTGTTGAAGGTGTTCTTCTTGTCACACCGACCTCAATAATGTTCGA
TCCTGATGCAAACGATCCACTTGCTATTCTACATGGGTGCGAAAAGTTTGGAATCATGTG
TAA

InterProScan

Gene3D	LysM_dom_sf (IPR036779) - T[13-79] 1.2E-12
CDD	LysM_dom (IPR018392) - T[28-71] 3.89002E-7
ProSiteProfiles	LysM_dom (IPR018392) - T[28-71] 10.646
SMART	LysM_dom (IPR018392) - T[29-72] 4.0E-7
Pfam	LysM_dom (IPR018392) - T[30-72] 8.9E-10

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
OXR1_HUMAN	53.521 %	87	3.09E-19
NCOA7_HUMAN	33.333 %	116	2.28E-29