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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C2.14.v4.A...'
  2. Transcript 'NCBI:KH.XM_018813288...'
  3. Molecular Tool 'Ci-Tbx6b-MO (Yagi's 25mer MO)'
  4. Transcript 'Phmamm.CG.MTP2014.S3...'
  5. Transcript 'KH2012:KH.C2.348.v1....'

Transcript Model

Transcript Id

KH2012:KH.C2.348.v1.A.nonSL8-2

Possible name(s)

NCOA7; OXR1; TLDC2

Location

KhC2 [5,985,975 / 5,995,471]

Sequences

Amino acid sequence

Length: 280

>KH.C2.348.v1.A.nonSL8-2
LSVGRVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLN
KLTSSYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKK
FQDLLVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGK
QPRTRMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGC
EKFGIMCNLSLITSVSMFCDKGCSSTRKLLKVFFLSHRPQ

Nucleotide sequence

Length: 997

>KH2012:KH.C2.348.v1.A.nonSL8-2
GATTATTGTGCTAAGGTCTTGTACGTATTTAAACTTTATACTGATTTTAAGGCGTGAAAA
ATAATACATATAAGAAAGTCATAATTAAGCGTAGGTCGTGTTTGGTGCTGTAAAAACATG
TTTTCGACCTGTAGCAGCCATAATGGAAACAGAAAATCATCTCAACCTGCAGGGACCATT
CAATACAACGTTGGGAACAGAGACACTTTAAGAAGCATTGCGGTTAACTTTAACACTACC
CCTTCAGCGATTATGAAGTTAAACAAACTAACGTCAAGTTACATTTTCCCTGAACAAGTT
TTATTTGTCCCGGAGACGAATATTTTGAAACCAACAGTAGAACAAGTGTCCCAAAACTCG
GGAACAAATTTTGACGGAGATTTTTCCTTCCTGGCTCCTTTGTCTGCATCACCTGGTCAA
CTTGACTTCTCAAAACCAAAGAAGTTCCAGGATTTGCTGGTAGTTTCCACACAAGAGGAT
ATTAAAGATGCAAACAGTAATTCAAAACTGCTAAGAGACATGGGAGCAGACACCAACAAA
CCAGAGGTTACAACAGAGACTCCAGTAAGCCCCACTATAACAAGAGGTATCTCCCAAACA
TCGGACACAAGTGTGGAAGGTAAACAACCTCGTACACGAATGTTTTCAACCGAGTCCGAA
CCATTTGAGGAAAACTTTATAAAGATGACTGTACGATATATTACCTCTACTCAGGAAACT
GTTGAAGGTGTTCTTCTCGTCACACCGACCTCAATAATGTTCGATCCTGATGCAAACGAT
CCACTTGCTATTCTACATGGGTGCGAAAAGTTTGGAATCATGTGTAACTTGTCTCTAATT
ACAAGTGTTTCCATGTTCTGTGATAAAGGATGCAGTAGTACAAGGAAACTGTTGAAGGTG
TTCTTCTTGTCACACCGACCTCAATAATGTTCGATCCTGATGCAAACGATCCACTTGCTA
TTCTACATGGGTGCGAAAAGTTTGGAATCATGTGTAA

InterProScan

Gene3D
LysM_dom_sf (IPR036779) - T[17-83] 1.2E-12
ProSiteProfiles
LysM_dom (IPR018392) - T[32-75] 10.646
CDD
LysM_dom (IPR018392) - T[32-75] 3.95895E-7
SMART
LysM_dom (IPR018392) - T[33-76] 4.0E-7
Pfam
LysM_dom (IPR018392) - T[34-76] 9.1E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
OXR1_HUMAN 53.521 % 87 3.59E-19
NCOA7_HUMAN 33.333 % 116 3.27E-29