- Transcript 'KH2012:KH.C2.21.v6.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.21.v6.A.SL4-1
Possible name(s)
CSMD1; MASP1; PAMR1
Gene model
Location
KhC2 [7,627,488 / 7,631,938]
Amino acid sequence
Length: 235
>KH.C2.21.v6.A.SL4-1
CFRLLNPVGGRVRLNMSSDVIITGTMALYSCIGDDVILIGNSTRVCLNTGGWSGYAPLCL
KGCGLFPMTSEILGTVPWHVTILRRNTVTNRWHPVCNGAFIGDNLIITSAQCVTYSFTNL
KYNVSSMVVGIGDVTRTVIRHKYHISRILIHHNYDPMLRHNDVALLVMTSSVPIDFSGEI
WPICLRASNKKRSKLLAARRRGLMSSWSPYMGCHVRNPSANGTRGCQDNHREVNG
Nucleotide sequence
Length: 2,365
>KH2012:KH.C2.21.v6.A.SL4-1
CTTGTTTCCGCTTACTCAACCCCGTTGGCGGGAGAGTTCGTTTGAATATGTCTAGTGACG
TCATAATCACTGGAACAATGGCGCTTTATTCGTGCATTGGGGATGACGTCATATTGATCG
GGAATTCTACTCGGGTTTGTTTAAACACTGGTGGTTGGTCGGGATATGCTCCACTATGTT
TAAAAGGATGCGGATTGTTTCCAATGACGTCAGAAATATTAGGGACTGTCCCGTGGCACG
TCACAATCTTGCGTCGAAACACTGTGACCAATCGTTGGCATCCTGTGTGTAATGGAGCAT
TTATCGGAGACAATCTAATTATTACAAGTGCACAGTGCGTCACTTACTCGTTCACGAATC
TGAAATACAATGTCAGCTCCATGGTTGTTGGTATCGGTGACGTAACAAGGACAGTCATAC
GTCATAAATATCACATTTCTCGGATTTTAATTCACCACAATTACGACCCCATGTTGCGTC
ATAATGACGTTGCATTGTTGGTGATGACGTCATCCGTTCCTATTGATTTTTCGGGAGAAA
TTTGGCCGATTTGTTTAAGGGCAAGCAACAAAAAGAGATCAAAACTTTTGGCCGCTAGAC
GTCGCGGTTTAATGAGTTCGTGGTCACCTTATATGGGCTGTCACGTGAGAAATCCTTCGG
CAAATGGAACAAGAGGTTGCCAAGATAACCATCGTGAGGTGAATGGATGAATGAATGTTA
CTTGTTTATCTCGCGTAGCGGGCAACGACAGCAGGTTAAAGTATTCAACGTAACTAGAGC
GAAGAATATTCACTGCAGTGGCAAGCTACGGATGGGCGGGAAATATATGTGTTGGCATTT
ACCTGCTCAACCTACCTGCCCTGTAGCAATTGGATTCGGTCAACCATTCTTTAACCGGGT
TGGGTCAAATACTGATTCAAATGCTGAAACACATCCGCGTGGTGGCGGTAGAGAGAGCTA
CGTATGGGTGCTGACAGGCATCGGGCGTGCGGCAGAGAACTGCAATGACCGATATGATTC
AAACTATATCGCATTCTCTAAAGTTGACAGGTATCTATCATGGATTCGCCAATGCATGAA
AGTACTAAGAAACGAAGGTGAATTATATCGACAAACTTAGTTGTGTTTTCCCATGTACGC
CTTCCCACGCTTTGTTTCTATAGCCCTGTTTTATAACGATTGGCGCACCGAACACACGTT
ATATTTTGACAAATATTTATTCGAGTAAAAGGTTATCAAATGTAATAAAGACTCGTCATT
TCCGCGTCGTATTATTGAAAAGCAGAACGTATATTGTTACAAAACGTTCTTTGTGTGACG
TCACAAAGACAACAATCGTCATTGTAATTTCGAAACATGGCAATCGGGAACTAAAAGTAA
AAATAGAGAAAGTAAAAAAGTAATACCAAAGTATGTGCGAATTTCACATTAAAACGGCTT
TTTCATAGTCTTTTTTCACAAGATTATGCACTGGTTTGGATTTCCCATGGTTAATTCGTC
TTTATTCAATACGTGTGCTTCTACCATACCGCCCGTGTGCTTAAATGAATCAGGTCTGCA
TCCACCGCATTCAATCCTTCTTATTGCGTTTGAGTTTTCGTTGGTTATTCGCGCAGAAGT
CTGATATGATTTTAAAGGAGTTCCGCATCGATGACAGCAAAGTCTTTTGTTTTCAGTGTG
CAATTGTTTATATACTTTCGCCATTTTTTATGATTGAATAAACGTGTATATTTCTGCAAA
TGCAAATAAGAGTAAACTATATAAAAATAAAATTATTCACTAGACTAAAAATAACGCAGA
AGAAAAAGTGTATTTTTGACAAATGCAAAATACAGTCATCATATAGGTCTGTGGAGTAAG
ATGGGATATCGATAGCACATAATATCTCATATTTTATAGTTGTAACGCTATTTTACGACC
GCGAGAATGCTGTTACGTAATTCTGTAAAATATTCTCTGATTTCTACGATATAAGACGAT
AAAAGAAAATATAAACCTGTCCCAACTTACCCCACCCTACCATCTATTGTAAACTTAAAA
AGCCTGCTCTGACTAAACTTATAACAAAACGTCAAATGACTGCCAATCATTTTACTACGC
TCTGCTTTATGTTATATTGCATGTCTTAAGTCTTTACGCATGTCTTTAAATAGTTAATTA
CGTCCTCAAAACGATAACGCGAAATTTACAACTACGTGTAGAGTTGTAGACAGTCGTAAG
CCATTGTTATGCTACCTATAGTACGTGTTCTCTCGCTGCTGCGGGTCATCGGTTAATCCC
ATTGCTGACTTTACAAGACGAGCTGTTCTTCTAATTACTGGAACTAGGTTAATTTTCCGA
GAAGTTATAAGTTACATAAAATAAA
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[1-59] 5.2E-4 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[1-59] 4.44E-6 |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[1-61] 7.847 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[13-59] 0.00152959 |
| ProSiteProfiles |
Trypsin_dom (IPR001254) - T[38-208] 10.286 |
| SUPERFAMILY |
Peptidase_S1_PA (IPR009003) - T[38-205] 1.18E-24 |
| Pfam |
Trypsin_dom (IPR001254) - T[74-191] 3.4E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAMR1_HUMAN | 32.597 % | 85.5 | 3.62E-19 |
