- Transcript 'KH2012:KH.C2.21.v4.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.21.v4.A.ND1-1
Possible name(s)
CSMD1; MASP1; PAMR1
Gene model
Location
KhC2 [7,616,903 / 7,631,938]
Amino acid sequence
Length: 689
>KH.C2.21.v4.A.ND1-1
MPLPYSIATVLFISLFLATVSCRRFSCQSTECRDRCSNTTCEFRWVACSCPNGLHTGYHT
PCCRDGDDCIPCSTQFSGCDLYKNCRDCVIGVPDQNVLSDRNENYCNACNKGWFGNTCTE
CGKIYNGNSGVIEILGYPNNADCVWTIGVTRTSTVELRFERFHLESGIHCSYDNLTIYDG
GDAPEAVVMTLCGHVPPRNFVSKFNVIILKFKSDDEKNFDGFRITYTKLSACAANPCLNG
GTCMVVAPTRFNCICEIGYYGEHCEFVCTARGRWSNQPPVCVSKCPRPSNPNHGYVDELS
GLTVTYGCDVGYVLEGSHRSRCLRNGNWDLNPPTCACFRLLNPVGGRVRLNMSSDVIITG
TMALYSCIGDDVILIGNSTRVCLNTGGWSGYAPLCLKGCGLFPMTSEILGTVPWHVTILR
RNTVTNRWHPVCNGAFIGDNLIITSAQCVTYSFTNLKYNVSSMVVGIGDVTRTVIRHKYH
ISRILIHHNYDPMLRHNDVALLVMTSSVPIDFSGEIWPICLRASNKKRSKLLAARRRGLM
SSWSPYMGCHVRNPSANGTRGCQDNHREVKVFNVTRAKNIHCSGKLRMGGKYMCWHLPAQ
PTCPVAIGFGQPFFNRVGSNTDSNAETHPRGGGRESYVWVLTGIGRAAENCNDRYDSNYI
AFSKVDRYLSWIRQCMKVLRNEGELYRQT
Nucleotide sequence
Length: 3,315
>KH2012:KH.C2.21.v4.A.ND1-1
ATGCCGTTGCCATACAGCATAGCAACGGTTTTATTCATCAGTTTATTTCTGGCGACAGTA
TCTTGTCGAAGATTTAGCTGTCAGTCTACAGAATGCAGGGACAGGTGCTCTAATACTACT
TGTGAGTTCAGATGGGTCGCGTGTTCTTGTCCAAATGGGTTACACACTGGATACCATACG
CCATGTTGCAGAGACGGTGACGACTGCATACCATGTTCGACTCAGTTTTCAGGCTGTGAT
CTGTATAAGAATTGCAGAGATTGCGTTATTGGTGTACCTGATCAAAATGTGTTGTCCGAT
AGAAACGAAAACTACTGCAACGCTTGTAATAAAGGCTGGTTTGGAAACACTTGCACGGAA
TGTGGTAAAATATACAATGGCAACAGTGGCGTTATTGAAATATTGGGATATCCAAACAAC
GCGGATTGCGTTTGGACCATTGGCGTGACGAGGACATCAACCGTTGAGTTAAGATTTGAA
AGATTTCATTTGGAATCTGGAATACATTGCTCATATGATAACTTGACGATCTATGACGGC
GGGGACGCCCCTGAAGCGGTTGTGATGACACTATGCGGTCACGTGCCGCCCAGAAACTTT
GTTTCGAAATTCAACGTCATCATATTAAAATTTAAGAGCGATGACGAGAAAAACTTTGAT
GGTTTTAGAATTACTTATACGAAGTTAAGTGCTTGTGCTGCTAATCCTTGTTTAAATGGA
GGTACCTGTATGGTAGTGGCACCAACCCGGTTTAATTGCATCTGCGAGATCGGGTACTAT
GGCGAACATTGTGAATTCGTTTGTACAGCCCGTGGCAGGTGGTCTAATCAACCTCCTGTT
TGTGTATCCAAATGTCCCCGACCCTCCAACCCCAACCATGGTTATGTAGACGAGCTTTCC
GGCCTAACTGTGACGTATGGGTGTGACGTAGGATACGTTCTAGAAGGTTCCCACCGTAGT
CGTTGCCTCCGAAACGGAAACTGGGATCTAAATCCCCCGACATGCGCTTGTTTCCGCTTA
CTCAACCCCGTTGGCGGGAGAGTTCGTTTGAATATGTCTAGTGACGTCATAATCACTGGA
ACAATGGCGCTTTATTCGTGCATTGGGGATGACGTCATATTGATCGGGAATTCTACTCGG
GTTTGTTTAAACACTGGTGGTTGGTCGGGATATGCTCCACTATGTTTAAAAGGATGCGGA
TTGTTTCCAATGACGTCAGAAATATTAGGGACTGTCCCGTGGCACGTCACAATCTTGCGT
CGAAACACTGTGACCAATCGTTGGCATCCTGTGTGTAATGGAGCATTTATCGGAGACAAT
CTAATTATTACAAGTGCACAGTGCGTCACTTACTCGTTCACGAATCTGAAATACAATGTC
AGCTCCATGGTTGTTGGTATCGGTGACGTAACAAGGACAGTCATACGTCATAAATATCAC
ATTTCTCGGATTTTAATTCACCACAATTACGACCCCATGTTGCGTCATAATGACGTTGCA
TTGTTGGTGATGACGTCATCCGTTCCTATTGATTTTTCGGGAGAAATTTGGCCGATTTGT
TTAAGGGCAAGCAACAAAAAGAGATCAAAACTTTTGGCCGCTAGACGTCGCGGTTTAATG
AGTTCGTGGTCACCTTATATGGGCTGTCACGTGAGAAATCCTTCGGCAAATGGAACAAGA
GGTTGCCAAGATAACCATCGTGAGGTTAAAGTATTCAACGTAACTAGAGCGAAGAATATT
CACTGCAGTGGCAAGCTACGGATGGGCGGGAAATATATGTGTTGGCATTTACCTGCTCAA
CCTACCTGCCCTGTAGCAATTGGATTCGGTCAACCATTCTTTAACCGGGTTGGGTCAAAT
ACTGATTCAAATGCTGAAACACATCCGCGTGGTGGCGGTAGAGAGAGCTACGTATGGGTG
CTGACAGGCATCGGGCGTGCGGCAGAGAACTGCAATGACCGATATGATTCAAACTATATC
GCATTCTCTAAAGTTGACAGGTATCTATCATGGATTCGCCAATGCATGAAAGTACTAAGA
AACGAAGGTGAATTATATCGACAAACTTAGTTGTGTTTTCCCATGTACGCCTTCCCACGC
TTTGTTTCTATAGCCCTGTTTTATAACGATTGGCGCACCGAACACACGTTATATTTTGAC
AAATATTTATTCGAGTAAAAGGTTATCAAATGTAATAAAGACTCGTCATTTCCGCGTCGT
ATTATTGAAAAGCAGAACGTATATTGTTACAAAACGTTCTTTGTGTGACGTCACAAAGAC
AACAATCGTCATTGTAATTTCGAAACATGGCAATCGGGAACTAAAAGTAAAAATAGAGAA
AGTAAAAAAGTAATACCAAAGTATGTGCGAATTTCACATTAAAACGGCTTTTTCATAGTC
TTTTTTCACAAGATTATGCACTGGTTTGGATTTCCCATGGTTAATTCGTCTTTATTCAAT
ACGTGTGCTTCTACCATACCGCCCGTGTGCTTAAATGAATCAGGTCTGCATCCACCGCAT
TCAATCCTTCTTATTGCGTTTGAGTTTTCGTTGGTTATTCGCGCAGAAGTCTGATATGAT
TTTAAAGGAGTTCCGCATCGATGACAGCAAAGTCTTTTGTTTTCAGTGTGCAATTGTTTA
TATACTTTCGCCATTTTTTATGATTGAATAAACGTGTATATTTCTGCAAATGCAAATAAG
AGTAAACTATATAAAAATAAAATTATTCACTAGACTAAAAATAACGCAGAAGAAAAAGTG
TATTTTTGACAAATGCAAAATACAGTCATCATATAGGTCTGTGGAGTAAGATGGGATATC
GATAGCACATAATATCTCATATTTTATAGTTGTAACGCTATTTTACGACCGCGAGAATGC
TGTTACGTAATTCTGTAAAATATTCTCTGATTTCTACGATATAAGACGATAAAAGAAAAT
ATAAACCTGTCCCAACTTACCCCACCCTACCATCTATTGTAAACTTAAAAAGCCTGCTCT
GACTAAACTTATAACAAAACGTCAAATGACTGCCAATCATTTTACTACGCTCTGCTTTAT
GTTATATTGCATGTCTTAAGTCTTTACGCATGTCTTTAAATAGTTAATTACGTCCTCAAA
ACGATAACGCGAAATTTACAACTACGTGTAGAGTTGTAGACAGTCGTAAGCCATTGTTAT
GCTACCTATAGTACGTGTTCTCTCGCTGCTGCGGGTCATCGGTTAATCCCATTGCTGACT
TTACAAGACGAGCTGTTCTTCTAATTACTGGAACTAGGTTAATTTTCCGAGAAGTTATAA
GTTACATAAAATAAA
| SMART |
EGF-like_dom (IPR000742) - T[31-70] 87.0 - T[71-119] 97.0 - T[231-265] 4.1E-5 |
| SUPERFAMILY |
Sperma_CUB_dom_sf (IPR035914) - T[118-229] 4.45E-28 |
| Pfam |
CUB_dom (IPR000859) - T[121-226] 2.7E-21 |
| Gene3D |
Sperma_CUB_dom_sf (IPR035914) - T[121-230] 9.1E-27 |
| SMART |
CUB_dom (IPR000859) - T[121-229] 4.4E-25 |
| ProSiteProfiles |
CUB_dom (IPR000859) - T[121-229] 20.78 |
| CDD |
CUB_dom (IPR000859) - T[122-227] 8.64144E-27 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[228-265] 19.252 |
| Pfam |
EGF-like_dom (IPR000742) - T[232-263] 4.4E-8 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[253-264] . |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[283-337] 9.794 - T[338-397] 6.604 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[284-336] 6.39E-10 - T[337-395] 1.33E-5 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[285-335] 5.2E-7 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[285-335] 8.8E-10 - T[337-395] 5.2E-4 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[285-335] 8.02483E-10 |
| ProSiteProfiles |
Trypsin_dom (IPR001254) - T[374-677] 14.952 |
| SUPERFAMILY |
Peptidase_S1_PA (IPR009003) - T[374-595] 7.86E-25 - T[638-677] 7.86E-25 |
| SMART |
Trypsin_dom (IPR001254) - T[407-672] 2.6E-5 |
| Pfam |
Trypsin_dom (IPR001254) - T[410-543] 1.6E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAMR1_HUMAN | 28.832 % | 223 | 3.19E-63 |
