- Transcript 'KH2012:KH.C2.21.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.21.v2.A.ND1-1
Possible name(s)
CSMD1; MASP1; PAMR1
Gene model
Location
KhC2 [7,616,903 / 7,631,938]
Amino acid sequence
Length: 571
>KH.C2.21.v2.A.ND1-1
MPLPYSIATVLFISLFLATVSCRRFSCQSTECRDRCSNTTCEFRWVACSCPNGLHTGYHT
PCCRDGDDCIPCSTQFSGCDLYKNCRDCVIGVPDQNVLSDRNENYCNACNKGWFGNTCTE
CGKIYNGNSGVIEILGYPNNADCVWTIGVTRTSTVELRFERFHLESGIHCSYDNLTIYDG
GDAPEAVVMTLCGHVPPRNFVSKFNVIILKFKSDDEKNFDGFRITYTKLSACAANPCLNG
GTCMVVAPTRFNCICEIGYYGEHCEFVCTARGRWSNQPPVCVSKCPRPSNPNHGYVDELS
GLTVTYGCDVGYVLEGSHRSRCLRNGNWDLNPPTCACFRLLNPVGGRVRLNMSSDVIITG
TMALYSCIGDDVILIGNSTRVCLNTGGWSGYAPLCLKGCGLFPMTSEILGTVPWHVTILR
RNTVTNRWHPVCNGAFIGDNLIITSAQCVTYSFTNLKYNVSSMVVGIGDVTRTVIRHKYH
ISRILIHHNYDPMLRHNDVALLVMTSSVPIDFSGEIWPICLRASNKKRSKLLAARRRGLM
SSWSPYMGCHVRNPSANGTRGCQDNHREVNG
Nucleotide sequence
Length: 3,371
>KH2012:KH.C2.21.v2.A.ND1-1
ATGCCGTTGCCATACAGCATAGCAACGGTTTTATTCATCAGTTTATTTCTGGCGACAGTA
TCTTGTCGAAGATTTAGCTGTCAGTCTACAGAATGCAGGGACAGGTGCTCTAATACTACT
TGTGAGTTCAGATGGGTCGCGTGTTCTTGTCCAAATGGGTTACACACTGGATACCATACG
CCATGTTGCAGAGACGGTGACGACTGCATACCATGTTCGACTCAGTTTTCAGGCTGTGAT
CTGTATAAGAATTGCAGAGATTGCGTTATTGGTGTACCTGATCAAAATGTGTTGTCCGAT
AGAAACGAAAACTACTGCAACGCTTGTAATAAAGGCTGGTTTGGAAACACTTGCACGGAA
TGTGGTAAAATATACAATGGCAACAGTGGCGTTATTGAAATATTGGGATATCCAAACAAC
GCGGATTGCGTTTGGACCATTGGCGTGACGAGGACATCAACCGTTGAGTTAAGATTTGAA
AGATTTCATTTGGAATCTGGAATACATTGCTCATATGATAACTTGACGATCTATGACGGC
GGGGACGCCCCTGAAGCGGTTGTGATGACACTATGCGGTCACGTGCCGCCCAGAAACTTT
GTTTCGAAATTCAACGTCATCATATTAAAATTTAAGAGCGATGACGAGAAAAACTTTGAT
GGTTTTAGAATTACTTATACGAAGTTAAGTGCTTGTGCTGCTAATCCTTGTTTAAATGGA
GGTACCTGTATGGTAGTGGCACCAACCCGGTTTAATTGCATCTGCGAGATCGGGTACTAT
GGCGAACATTGTGAATTCGTTTGTACAGCCCGTGGCAGGTGGTCTAATCAACCTCCTGTT
TGTGTATCCAAATGTCCCCGACCCTCCAACCCCAACCATGGTTATGTAGACGAGCTTTCC
GGCCTAACTGTGACGTATGGGTGTGACGTAGGATACGTTCTAGAAGGTTCCCACCGTAGT
CGTTGCCTCCGAAACGGAAACTGGGATCTAAATCCCCCGACATGCGCTTGTTTCCGCTTA
CTCAACCCCGTTGGCGGGAGAGTTCGTTTGAATATGTCTAGTGACGTCATAATCACTGGA
ACAATGGCGCTTTATTCGTGCATTGGGGATGACGTCATATTGATCGGGAATTCTACTCGG
GTTTGTTTAAACACTGGTGGTTGGTCGGGATATGCTCCACTATGTTTAAAAGGATGCGGA
TTGTTTCCAATGACGTCAGAAATATTAGGGACTGTCCCGTGGCACGTCACAATCTTGCGT
CGAAACACTGTGACCAATCGTTGGCATCCTGTGTGTAATGGAGCATTTATCGGAGACAAT
CTAATTATTACAAGTGCACAGTGCGTCACTTACTCGTTCACGAATCTGAAATACAATGTC
AGCTCCATGGTTGTTGGTATCGGTGACGTAACAAGGACAGTCATACGTCATAAATATCAC
ATTTCTCGGATTTTAATTCACCACAATTACGACCCCATGTTGCGTCATAATGACGTTGCA
TTGTTGGTGATGACGTCATCCGTTCCTATTGATTTTTCGGGAGAAATTTGGCCGATTTGT
TTAAGGGCAAGCAACAAAAAGAGATCAAAACTTTTGGCCGCTAGACGTCGCGGTTTAATG
AGTTCGTGGTCACCTTATATGGGCTGTCACGTGAGAAATCCTTCGGCAAATGGAACAAGA
GGTTGCCAAGATAACCATCGTGAGGTGAATGGATGAATGAATGTTACTTGTTTATCTCGC
GTAGCGGGCAACGACAGCAGGTTAAAGTATTCAACGTAACTAGAGCGAAGAATATTCACT
GCAGTGGCAAGCTACGGATGGGCGGGAAATATATGTGTTGGCATTTACCTGCTCAACCTA
CCTGCCCTGTAGCAATTGGATTCGGTCAACCATTCTTTAACCGGGTTGGGTCAAATACTG
ATTCAAATGCTGAAACACATCCGCGTGGTGGCGGTAGAGAGAGCTACGTATGGGTGCTGA
CAGGCATCGGGCGTGCGGCAGAGAACTGCAATGACCGATATGATTCAAACTATATCGCAT
TCTCTAAAGTTGACAGGTATCTATCATGGATTCGCCAATGCATGAAAGTACTAAGAAACG
AAGGTGAATTATATCGACAAACTTAGTTGTGTTTTCCCATGTACGCCTTCCCACGCTTTG
TTTCTATAGCCCTGTTTTATAACGATTGGCGCACCGAACACACGTTATATTTTGACAAAT
ATTTATTCGAGTAAAAGGTTATCAAATGTAATAAAGACTCGTCATTTCCGCGTCGTATTA
TTGAAAAGCAGAACGTATATTGTTACAAAACGTTCTTTGTGTGACGTCACAAAGACAACA
ATCGTCATTGTAATTTCGAAACATGGCAATCGGGAACTAAAAGTAAAAATAGAGAAAGTA
AAAAAGTAATACCAAAGTATGTGCGAATTTCACATTAAAACGGCTTTTTCATAGTCTTTT
TTCACAAGATTATGCACTGGTTTGGATTTCCCATGGTTAATTCGTCTTTATTCAATACGT
GTGCTTCTACCATACCGCCCGTGTGCTTAAATGAATCAGGTCTGCATCCACCGCATTCAA
TCCTTCTTATTGCGTTTGAGTTTTCGTTGGTTATTCGCGCAGAAGTCTGATATGATTTTA
AAGGAGTTCCGCATCGATGACAGCAAAGTCTTTTGTTTTCAGTGTGCAATTGTTTATATA
CTTTCGCCATTTTTTATGATTGAATAAACGTGTATATTTCTGCAAATGCAAATAAGAGTA
AACTATATAAAAATAAAATTATTCACTAGACTAAAAATAACGCAGAAGAAAAAGTGTATT
TTTGACAAATGCAAAATACAGTCATCATATAGGTCTGTGGAGTAAGATGGGATATCGATA
GCACATAATATCTCATATTTTATAGTTGTAACGCTATTTTACGACCGCGAGAATGCTGTT
ACGTAATTCTGTAAAATATTCTCTGATTTCTACGATATAAGACGATAAAAGAAAATATAA
ACCTGTCCCAACTTACCCCACCCTACCATCTATTGTAAACTTAAAAAGCCTGCTCTGACT
AAACTTATAACAAAACGTCAAATGACTGCCAATCATTTTACTACGCTCTGCTTTATGTTA
TATTGCATGTCTTAAGTCTTTACGCATGTCTTTAAATAGTTAATTACGTCCTCAAAACGA
TAACGCGAAATTTACAACTACGTGTAGAGTTGTAGACAGTCGTAAGCCATTGTTATGCTA
CCTATAGTACGTGTTCTCTCGCTGCTGCGGGTCATCGGTTAATCCCATTGCTGACTTTAC
AAGACGAGCTGTTCTTCTAATTACTGGAACTAGGTTAATTTTCCGAGAAGTTATAAGTTA
CATAAAATAAA
| SMART |
EGF-like_dom (IPR000742) - T[31-70] 87.0 - T[71-119] 97.0 - T[231-265] 4.1E-5 |
| SUPERFAMILY |
Sperma_CUB_dom_sf (IPR035914) - T[118-229] 3.27E-28 |
| SMART |
CUB_dom (IPR000859) - T[121-229] 4.4E-25 |
| Pfam |
CUB_dom (IPR000859) - T[121-226] 2.0E-21 |
| ProSiteProfiles |
CUB_dom (IPR000859) - T[121-229] 20.78 |
| Gene3D |
Sperma_CUB_dom_sf (IPR035914) - T[121-230] 6.8E-27 |
| CDD |
CUB_dom (IPR000859) - T[122-227] 1.18925E-26 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[228-265] 19.252 |
| Pfam |
EGF-like_dom (IPR000742) - T[232-263] 3.5E-8 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[253-264] . |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[283-337] 9.794 - T[338-397] 6.604 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[284-336] 4.73E-10 - T[337-395] 1.04E-5 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[285-335] 8.8E-10 - T[337-395] 5.2E-4 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[285-335] 1.11375E-9 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[285-335] 4.1E-7 |
| ProSiteProfiles |
Trypsin_dom (IPR001254) - T[374-544] 10.286 |
| SUPERFAMILY |
Peptidase_S1_PA (IPR009003) - T[374-536] 1.24E-23 |
| Pfam |
Trypsin_dom (IPR001254) - T[410-527] 2.3E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAMR1_HUMAN | 28.417 % | 223 | 2.27E-64 |
