- Transcript 'KH2012:KH.C2.21.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.21.v1.A.ND3-2
Possible name(s)
CSMD1; MASP1; PAMR1
Gene model
Location
KhC2 [7,616,899 / 7,619,999]
Amino acid sequence
Length: 287
>KH.C2.21.v1.A.ND3-2
TMPLPYSIATVLFISLFLATVSCRRFSCQSTECRDRCSNTTCEFRWVACSCPNGLHTGYH
TPCCRDGDDCIPCSTQFSGCDLYKNCRDCVIGVPDQNVLSDRNENYCNACNKGWFGNTCT
ECGKIYNGNSGVIEILGYPNNADCVWTIGVTRTSTVELRFERFHLESGIHCSYDNLTIYD
GGDAPEAVVMTLCGHVPPRNFVSKFNVIILKFKSDDEKNFDGFRITYTKLSACAANPCLN
GGTCMVVAPTRFNCICEIGYYGEHCEFDLRCRLQTTSFNPASVLFLW
Nucleotide sequence
Length: 985
>KH2012:KH.C2.21.v1.A.ND3-2
AACAATGCCGTTGCCATACAGCATAGCAACGGTTTTATTCATCAGTTTATTTCTGGCGAC
AGTATCTTGTCGAAGATTTAGCTGTCAGTCTACAGAATGCAGGGACAGGTGCTCTAATAC
TACTTGTGAGTTCAGATGGGTCGCGTGTTCTTGTCCAAATGGGTTACACACTGGATACCA
TACGCCATGTTGCAGAGACGGTGACGACTGCATACCATGTTCGACTCAGTTTTCAGGCTG
TGATCTGTATAAGAATTGCAGAGATTGCGTTATTGGTGTACCTGATCAAAATGTGTTGTC
CGATAGAAACGAAAACTACTGCAACGCTTGTAATAAAGGCTGGTTTGGAAACACTTGCAC
GGAATGTGGTAAAATATACAATGGCAACAGTGGCGTTATTGAAATATTGGGATATCCAAA
CAACGCGGATTGCGTTTGGACCATTGGCGTGACGAGGACATCAACCGTTGAGTTAAGATT
TGAAAGATTTCATTTGGAATCTGGAATACATTGCTCATATGATAACTTGACGATCTATGA
CGGCGGGGACGCCCCTGAAGCGGTTGTGATGACACTATGCGGTCACGTGCCGCCCAGAAA
CTTTGTTTCGAAATTCAACGTCATCATATTAAAATTTAAGAGCGATGACGAGAAAAACTT
TGATGGTTTTAGAATTACTTATACGAAGTTAAGTGCTTGTGCTGCTAATCCTTGTTTAAA
TGGAGGTACCTGTATGGTAGTGGCACCAACCCGGTTTAATTGCATCTGCGAGATCGGGTA
CTATGGCGAACATTGTGAATTCGATTTACGGTGCAGGCTGCAGACCACCAGCTTTAACCC
CGCATCTGTATTATTCCTTTGGTGAAAGAGAGTTACGCTACGGTGCAGAGGTAAGAGGCT
AGAATATACGGGTGCTTGTTATAATATTGTGCGACTGTACTGTAACTGTTATAATAACTT
GAATGAATGAATGAATCTTACTTTA
| SMART |
EGF-like_dom (IPR000742) - T[32-71] 87.0 - T[72-120] 97.0 - T[232-266] 4.1E-5 |
| SUPERFAMILY |
Sperma_CUB_dom_sf (IPR035914) - T[119-230] 8.64E-29 |
| ProSiteProfiles |
CUB_dom (IPR000859) - T[122-230] 20.78 |
| Gene3D |
Sperma_CUB_dom_sf (IPR035914) - T[122-231] 1.8E-27 |
| Pfam |
CUB_dom (IPR000859) - T[122-227] 5.6E-22 |
| SMART |
CUB_dom (IPR000859) - T[122-230] 4.4E-25 |
| CDD |
CUB_dom (IPR000859) - T[123-228] 2.92456E-27 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[229-266] 19.252 |
| Pfam |
EGF-like_dom (IPR000742) - T[233-264] 1.5E-8 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[254-265] . - T[254-265] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAMR1_HUMAN | 33.333 % | 141 | 7.22E-38 |
