- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.C9.29.v2.B...' >
- Molecular Tool 'Ci-chordin mRNA' >
- Transcript 'KH2012:KH.C4.45.v1.A...' >
- Transcript 'KH2012:KH.C2.209.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.209.v2.A.SL1-1
Possible name(s)
CALM1; CALM3; CALML3
Gene model
Location
KhC2 [4,725,672 / 4,731,223]
Amino acid sequence
Length: 203
>KH.C2.209.v2.A.SL1-1
SVVNFYYALEMAQEKSRQYKRRLRDKIRYCSNVSILSTLSVGSEGNWKMRVPSLRASQLP
EELLEVYEEAFYLLDPNDTGAIGAREVGIVMRALGQEPTDEEIQNLIQEVDRSSTGSLTF
NDFLAFLAHICQDEDPDEEWESVFKRFDRNGDGYIDENDLRKSLIELRLKFTDADIEEMI
CEFLPPNAKVRRLDFDDFINIVA
Nucleotide sequence
Length: 1,548
>KH2012:KH.C2.209.v2.A.SL1-1
ATTAATTGCAGTTCAATTAAATTTAATCTGTGGTTAATTTTTATTACGCCCTCGAGATGG
CGCAAGAGAAGTCGCGACAATACAAGCGGAGACTTCGGGATAAGATTCGTTACTGCAGCA
ATGTTAGCATCCTAAGCACTCTCAGCGTTGGTTCGGAAGGCAACTGGAAAATGAGAGTTC
CCTCTCTTCGAGCAAGTCAGCTGCCAGAGGAATTGTTAGAGGTTTACGAAGAAGCTTTCT
ATTTGTTAGATCCAAACGATACGGGCGCCATCGGCGCTAGAGAGGTAGGCATCGTCATGC
GAGCGCTTGGGCAAGAACCAACCGATGAAGAAATACAGAACCTTATACAAGAAGTTGACC
GGAGTTCCACGGGTTCGCTCACTTTTAACGACTTTCTAGCTTTCCTCGCCCATATTTGCC
AGGACGAAGACCCCGACGAAGAATGGGAATCTGTGTTTAAAAGATTTGATAGAAACGGTG
ACGGATATATTGACGAAAATGACCTGCGCAAGTCTTTAATAGAACTCAGACTTAAATTTA
CCGACGCCGACATTGAAGAAATGATTTGCGAATTTTTGCCTCCTAACGCCAAAGTGCGAA
GGCTTGATTTTGATGACTTTATTAACATAGTTGCGTAACACACATATATATATATATGAT
TGTTGTGGTGCATGGCAGGACTGCATTCTATTTAAATCAACACCGTGCTTACTGCTATCA
CAATTATTCCATTTGTTTGAGAAATTGTTGTTGAAGAAGGACTGACTTCTTTGAGGCGTT
TATTAATGAGATTGTGACCATAAATTAATATGTTGGTTTTAACTGTTAGTTGGCGTTCTT
CTCCTTTAAATTAATGCATCAGTCTAATGCATTGTTACGCTGCTAGCAGATTCTTACATT
CAAACATAATATTGTATAACCTTAATGTTCAGACGAATTCTACCAAACATGTACCTTGTA
TTCTTATTTTTGGTGCTTCTTACTTTAATGCAATCTTCAATTTTCAGCTTTGCGCTTTCA
TAACGCGTGTTCATAATACAATGCAAATGTTGCATAAGTCCATACTTTAAACTTTTTATC
TTTTTATGAACTCGTATATTTTAGAAGCAACAAATAGAAACGCTCATGGTATATATACTT
CTGCATCTATACTAGTTAAATTAATTTTTGGCTTCAGTGCTACATATTGGTGTTAATTTG
TTTTTATTTCTGCTGGTCACTATAAGACACTGATATATAGTAGGGGTGGGGAAAGATGGG
ACGCGTTTTCATTCTATATTTTTTCCAAATTGGTAGTAAACAAAAACATTTAAAGAATTA
TAAAACCGTTTCCCCACGATATACCCTTGTTAATTGTTTAAAACCTGATCAGGATGTTTG
AATATTATGTGCTAAAGGTGTCCCGTCTTCCTCCACTGTACAATATACATCAAATTTCAG
ACACCTTTGTCGCAGTAAGCATGTCACAAGCATTTTGTTATGATTTTTTTATCGTAAAAA
ATATGACAGAAACACTGACAGTGGCCAATAAAGGAATGCGAAAACGAA
| SUPERFAMILY |
EF-hand-dom_pair (IPR011992) - T[52-202] 2.62E-35 |
| ProSiteProfiles |
EF_hand_dom (IPR002048) - T[62-97] 9.939 - T[98-133] 11.054 - T[135-170] 14.29 |
| Pfam |
EF_hand_dom (IPR002048) - T[66-127] 6.0E-10 - T[139-164] 8.4E-7 |
| SMART |
EF_hand_dom (IPR002048) - T[66-94] 18.0 - T[102-130] 0.14 - T[139-167] 0.002 |
| ProSitePatterns |
EF_Hand_1_Ca_BS (IPR018247) - T[75-87] . - T[111-123] . - T[148-160] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CALM1_HUMAN | 42.52 % | 109 | 1.06E-30 |
| CALM3_HUMAN | 42.52 % | 109 | 1.06E-30 |
| CALM2_HUMAN | 42.52 % | 109 | 1.06E-30 |