- Transcript 'KH2012:KH.C2.16.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.16.v1.A.ND1-1
Possible name(s)
DDX27; DDX47; DDX54
Gene model
Location
KhC2 [349,061 / 355,070]
Amino acid sequence
Length: 728
>KH.C2.16.v1.A.ND1-1
GYRRFTVLFKMDLIQTIEEGTEVTLVSEDSESDEELTLVSKKQRTEKKLESKGFNPSFQF
EDDGFYESKWTLESALHDAIKKKKMHSTLDQKIDEVRRNRITVIQQIPSNPQDEEDVVSD
DDEELDLEDVSEAVSDKLKFIEKKRKKKRKVDSEEKIVQIPLAEIKDGSGVDKNVSWDPN
LGFQQMNISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVL
ERLLYRTQSTPITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLAAGGLDMKSQEAALR
QGPDIVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQ
TMLFSATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAAL
CSRSFISNVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKRFKNGDIDIL
VCTDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRSVSLVGETERKLLKE
IVKFAKNPVKSRVVPPDVISKFRDKLNEIESEVGDVMKMEAQEKQVIASENQVKKAEKII
KGEAPEKRAWFQNKMQREFAKAERMLGTHSESKKRGKKMKNKSGSTSTNNPEDRVKRELE
KTQAFQHREQKRGRKQKRARSCAEPVPVKTIKIQPKKKKSSFDKELTRTGKKSLGKHRDI
KRRKNKKR
Nucleotide sequence
Length: 2,506
>KH2012:KH.C2.16.v1.A.ND1-1
CATTGGACACGGTAAGGATACCGAAGGTTTACTGTGTTATTCAAAATGGATTTAATACAG
ACTATTGAAGAAGGTACTGAAGTAACTCTTGTGTCAGAAGATAGTGAAAGTGACGAAGAG
TTAACATTGGTGAGTAAAAAGCAACGAACAGAGAAGAAATTAGAAAGCAAAGGTTTTAAT
CCATCATTTCAATTCGAAGATGATGGATTTTATGAATCAAAATGGACGCTTGAATCTGCG
TTACACGATGCTATTAAGAAAAAGAAAATGCATTCAACGTTGGATCAAAAGATTGATGAA
GTTCGAAGGAATCGAATAACGGTTATTCAGCAAATTCCTAGCAATCCACAAGATGAGGAG
GATGTTGTTTCTGATGATGATGAGGAGTTGGATCTTGAAGATGTTTCTGAGGCTGTTTCA
GATAAACTAAAATTTATTGAGAAGAAAAGAAAAAAGAAACGAAAAGTTGATTCTGAAGAA
AAAATTGTTCAGATACCTTTGGCTGAAATCAAAGATGGCTCTGGTGTCGATAAGAATGTA
TCTTGGGATCCAAATTTAGGGTTTCAGCAAATGAATATTTCAAGGCCGCTGTTGAAAGCT
ATAAGTGAAATCAACTATGTTACTCCAACCCCTATACAACAAGCTGCCATTCCTATTGGT
TTGCTTGGTAGAGATATTTGTGCTTGTGCTGCTACAGGGACAGGTAAAACTGCTGCATTT
ATGCTGCCAGTCCTTGAGAGACTACTTTACCGAACCCAATCAACTCCTATCACCCGAGTT
CTGTGTTTGGTGCCCACCCGAGAACTGGCAGTGCAAGTTTATAGTGTAACTCATCATCTT
GCTCAACATAGTAACTTAAGAATATGCCTCGCAGCAGGTGGGCTTGATATGAAAAGTCAG
GAAGCTGCACTGAGACAAGGTCCGGACATCGTGATTGCCACCCCTGGTAGATTGATTGAT
CATTTACACAACACGCCTTCTTTTGACTTGCAGATGGTTGAAATTCTAATTCTTGATGAG
GCTGACAGAATGTTGGATGAATTTTTTGAGGACCAAATGAATGAAATAATAAAGCTGTGT
TCGCACCACAGACAAACAATGTTGTTTTCAGCAACAATGTCCGAACAGGTGCAAGAACTT
GCTGCTGTTTCATTAAAGAATCCTGTGAAAATTTTTGTGAACAGCAACACAGATGTTGCT
CCGTTTTTGAGACAAGAATTTATCCGAATTCGAGAAACCAGAGAGGGAGACAGAGAGGCA
ATAGTTGCAGCTTTATGCAGTCGATCATTCATATCCAACGTGCTGGTTTTTACTCAAACT
AAGAAACAAGCTCATCGAATGCATATTGTACTAGGGTTGTTGGGATTAAAGGCTGGTGAA
CTTCATGGGAATTTATCCCAAGGTCAGAGGTTGGAAAGTTTGAAAAGGTTTAAAAACGGA
GATATAGATATCCTGGTGTGTACTGATCTTGCAGCTCGTGGATTGGATATTGAAAATGTT
AAAACTGTTATTAACTTGACAATGCCCAACACGCAACAGCACTACGTTCATAGAGTTGGT
AGAACAGCAAGGGCTGGTAAAAGTGGAAGATCTGTATCGCTTGTTGGGGAGACCGAGAGA
AAACTGTTGAAAGAAATTGTAAAATTTGCAAAGAACCCGGTGAAAAGCAGAGTGGTTCCT
CCTGATGTGATTTCCAAGTTTCGTGACAAACTGAATGAGATTGAATCCGAAGTTGGTGAT
GTCATGAAAATGGAGGCACAAGAAAAACAAGTCATCGCATCAGAAAATCAAGTAAAGAAG
GCAGAAAAGATTATAAAAGGAGAAGCTCCTGAAAAAAGAGCATGGTTTCAAAATAAAATG
CAACGGGAATTCGCTAAAGCTGAGAGAATGCTCGGAACACATTCAGAGTCTAAAAAACGT
GGAAAAAAGATGAAAAATAAAAGTGGTTCAACGTCAACAAACAATCCTGAAGATCGTGTG
AAGAGAGAACTTGAAAAAACACAAGCTTTCCAACATCGAGAACAAAAACGTGGCAGAAAA
CAAAAAAGGGCGAGATCTTGTGCTGAACCTGTGCCAGTTAAAACAATAAAGATACAACCA
AAAAAGAAAAAAAGTTCATTCGACAAGGAGTTAACTAGAACTGGCAAAAAATCCTTGGGG
AAACACAGAGACATAAAAAGAAGAAAGAATAAGAAAAGATAAGGATGCTTAAATTTCTGT
TTAGGTGAAAATAAAATCAGAATCATCAAACTGATTGCCAGCTTTTATTATAAAACAATT
CGAGTCTAAACCAGTCGTCTGATGCACTAGTGTGTGTTGAAGTTGTGGATGAGTTGTATA
CTTGTTGTCATCAACACGTACAGGGCAGCATGTATCTTCTGATGTTTGCTACTTGTTCAT
TCTATTCCTTGCTGTCTATCTCTTACAGTTGCTTTAAACCTCTCCTCCAGTAAAGATATT
TCACTGATTAAATCAGTAATCGCATTCGTGAAGGCTTCTTGTGGGC
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[171-388] 9.34E-67 - T[328-535] 3.26E-48 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[181-209] 11.329 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[200-401] 2.6E-56 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[205-375] 2.4E-47 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[212-386] 30.145 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[332-340] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[397-560] 20.906 |
| Pfam |
Helicase_C (IPR001650) - T[415-521] 2.2E-27 |
| CDD |
Helicase_C (IPR001650) - T[429-529] 4.98716E-33 |
| SMART |
Helicase_C (IPR001650) - T[440-521] 4.0E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 54.29 % | 721 | 0 |
| DDX47_HUMAN | 41.389 % | 272 | 1.03E-83 |
| DDX54_HUMAN | 39.617 % | 245 | 7.85E-70 |
