- Molecular Tool 'Cirobu.Bra>MRFbNN (Izzi 2013)' >
- Transcript 'KH2012:KH.C2.101.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.101.v1.A.SL1-2
Possible name(s)
SYT1; SYT2; SYT5
Gene model
Location
KhC2 [6,805,748 / 6,809,074]
Amino acid sequence
Length: 310
>KH.C2.101.v1.A.SL1-2
RGSKEMSLFRKLVKRAEDSSTDPTSDAADAPTTTQPPAPGGDTPEDVLKGAIDNIYSKLP
SWAWILIAIGAGLILLCVLYCCCKRCCCKKKKKKQEKKGLKNAIDLKSVKNMGDSYREKV
QPDVDEVDIGEKEDEEEKKLGKLQFSLDYDFQQNNLAVGVIQAADLPGMDMGGTSDPYVK
VFMLPDKKKKQETKVHRKTLNPVFNETFNFKVPYNEIGGKTLVFAVYDFDRFSKHDIIGE
VRVPMNQVDLGTITEEWRDLTSAENDKENVRIKIVFFSFVCHGLAQGFIFYDYIVLCIPI
QRCFLFTIRN
Nucleotide sequence
Length: 1,621
>KH2012:KH.C2.101.v1.A.SL1-2
ACTTCGGTAGCACCGAATTAAATAATATTAGTTGTATAGGCTTTACAGTATCTTAAGTAT
CGGAAACTTTTAAGATAGCAGATAACCGGACGTGAGTCATTCGATAAATGATGTGTTAAC
AAAAGAAAGTTGATGTTATTTATCGCAGTATAGAAATACAGACGTACAAACGTTCGATAC
ATTCGACCGTTTTCCTTTATGTTATTATATTGTGATACTATTGTATTGAATAGTGCGTCA
CCATACGTGAATGCGACTTAAAATCGTCAAAATGCCGCGTGTTCATAACGAGACGATTGT
AGGGAGTATTACAGAGTAAAAGAAATTTTAGTTCAGCCTTCATTACCCTACGGTAAAATG
TTGCAACGGCTTGGAAATCGATTTTTAAATATGGCCAGCTTGTGGCGTTTGAATCTCGTA
TGGATTAATTTCCTTCATCAGGGATTTACATTTGAACCTTTTAATATATAGGTTTGTTCA
ATATTCGACCAAGTTATACCGCTGTAGTTGCTGATCAACTAAAGTTAGCGTGGAAGCAAG
GAGATGTCCTTGTTTCGGAAGTTGGTAAAGAGAGCGGAAGACTCCTCTACTGATCCAACA
AGTGATGCAGCGGATGCTCCGACAACAACACAACCTCCGGCACCAGGAGGAGATACTCCG
GAGGATGTCTTGAAAGGAGCAATTGACAACATTTACTCAAAACTTCCAAGTTGGGCATGG
ATTCTGATCGCAATTGGGGCAGGACTTATATTGTTATGTGTCCTATACTGTTGCTGTAAA
CGATGCTGCTGCAAAAAGAAGAAGAAAAAGCAGGAAAAGAAAGGCCTAAAGAACGCTATA
GATCTCAAATCTGTAAAGAATATGGGTGACAGTTACAGAGAAAAAGTCCAACCTGACGTT
GACGAAGTTGATATCGGTGAAAAAGAAGACGAAGAAGAGAAGAAATTGGGAAAGTTGCAA
TTTTCACTTGATTATGATTTCCAACAAAACAATTTGGCTGTCGGGGTAATTCAAGCTGCG
GATCTTCCTGGAATGGACATGGGAGGGACTTCGGATCCTTATGTCAAAGTATTCATGCTT
CCTGACAAGAAGAAAAAGCAAGAAACCAAAGTCCATCGAAAAACATTGAACCCGGTTTTC
AACGAAACATTCAATTTCAAGGTACCATACAATGAAATTGGTGGAAAAACTTTGGTTTTC
GCCGTTTACGACTTTGATCGCTTCTCAAAACACGATATTATCGGTGAAGTGAGAGTCCCT
ATGAACCAAGTCGATCTTGGTACGATCACTGAAGAATGGAGAGACTTAACCAGTGCCGAA
AACGACAAAGAAAACGTGAGAATAAAGATTGTATTCTTTTCTTTTGTCTGCCATGGCCTC
GCGCAAGGGTTTATATTTTACGACTACATTGTATTGTGTATACCTATACAGCGTTGCTTT
TTGTTTACGATTAGAAATTAGAAATATTCCAGATCTATCTATTAAAAGGACGTCTGTTAA
TTACGAATTCTGTATTGATTTTAAATGTAACAATTAACCTGCTTTTAGTAATCGATTATC
GCAATCACGTTAACATGTGGCGTGGCCAATCGAAGAAATACATCTGGTCGTACAAATGAT
A
| PANTHER |
Synaptotagmin1/2 (IPR015428) - T[52-268] 1.2E-97 |
| Gene3D |
C2_domain_sf (IPR035892) - T[127-271] 3.3E-50 |
| PRINTS |
Synaptotagmin (IPR001565) - T[143-158] 8.6E-20 - T[158-171] 8.6E-20 - T[213-228] 8.6E-20 - T[233-243] 8.6E-20 |
| ProSiteProfiles |
C2_dom (IPR000008) - T[154-242] 21.453 |
| SMART |
C2_dom (IPR000008) - T[155-257] 2.5E-24 |
| Pfam |
C2_dom (IPR000008) - T[155-260] 1.1E-29 |
| PRINTS |
C2_dom (IPR000008) - T[171-183] 1.5E-10 - T[198-211] 1.5E-10 - T[222-230] 1.5E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYT2_HUMAN | 54.275 % | 240 | 7.01E-77 |
| SYT5_HUMAN | 46.789 % | 226 | 1.22E-71 |
| SYT1_HUMAN | 57.977 % | 253 | 1.01E-81 |