- Transcript 'KH2012:KH.C1.959.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.959.v1.A.SL1-1
Possible name(s)
HOXA4; HOXB4; HOXC4
Gene model
Location
KhC1 [9,924,112 / 9,931,435]
Amino acid sequence
Length: 347
>KH.C1.959.v1.A.SL1-1
FIVIGNSLSLVTMSIIDQTELDFHNRGYVTNGIIKDRDVIDQGLPFFPTHHESAAALNLA
DMHGRGKEQAISSSKSSPEDDKTDEEYQAMGSRRSSNGPPVVYPWMKRIHVSQVINGLES
GKRPRTAYTRHQVLELEKEFHYNRYLTRRRRIEIAHGLCLSERQVKIWFQNRRMKWKKDH
KLPNTKVRNPPTSSLPILPTPSPPMTSLNHMLPNLSLPGSQSSPHNYDKSPPMTPTGGEY
PIPNHALMHQPMTSRELNDAIGDSPTTEASYKSHDRRELDAMTSFQECNPPRNDHHPLMF
DATGIPHSTFYGGVMSIPNSWNGDHSRAYISANQNSPYPSYPLSTFQ
Nucleotide sequence
Length: 1,223
>KH2012:KH.C1.959.v1.A.SL1-1
AATAATTCATTGTTATTGGTAATTCATTATCTCTAGTGACAATGTCAATAATTGATCAAA
CGGAATTGGATTTCCACAACCGTGGATACGTCACAAACGGCATTATCAAGGACCGTGATG
TCATAGACCAAGGGTTGCCATTTTTCCCCACCCATCATGAATCGGCAGCGGCCTTGAACT
TGGCCGATATGCACGGCCGTGGGAAAGAACAGGCGATCTCTTCCAGTAAGTCGAGTCCGG
AGGATGACAAGACAGATGAAGAATATCAAGCAATGGGAAGCAGGAGAAGCAGCAACGGGC
CTCCCGTTGTTTATCCTTGGATGAAAAGGATTCATGTCAGTCAAGTGATAAACGGGTTGG
AGTCGGGTAAGAGACCAAGAACCGCTTACACGCGACACCAGGTACTTGAACTGGAAAAGG
AGTTCCATTATAATAGATACCTTACAAGAAGAAGACGAATAGAGATTGCTCATGGTCTCT
GCCTAAGTGAAAGACAGGTTAAGATTTGGTTCCAAAACCGTCGAATGAAATGGAAAAAAG
ATCACAAGCTGCCCAACACTAAAGTGAGGAACCCACCTACGTCATCACTGCCTATTCTCC
CGACACCCAGTCCTCCTATGACGTCACTGAACCATATGTTACCTAACTTATCGCTGCCAG
GGAGTCAAAGTTCACCCCATAATTATGATAAGAGTCCCCCTATGACTCCTACAGGAGGGG
AATACCCGATACCCAACCACGCGTTGATGCACCAGCCGATGACGTCACGAGAGTTGAATG
ACGCAATTGGGGATTCCCCAACGACGGAAGCGAGTTACAAAAGCCACGATCGAAGGGAGT
TAGACGCGATGACTTCTTTCCAAGAATGCAACCCACCACGCAACGACCATCACCCTCTTA
TGTTTGACGCCACGGGTATTCCACACTCTACTTTCTACGGCGGTGTGATGAGCATTCCCA
ATTCGTGGAACGGTGATCACTCACGTGCTTATATATCAGCCAATCAGAACTCTCCCTACC
CCTCCTACCCTCTGTCGACCTTCCAGTGATCACGTGATCATATGACGTCATTTTGGTCGT
GATATATCGAGTAATTGTTGTGGCAGGTGTGACGTAATAAGACTGATTGTTTTGTGTGAA
TACTGCGCTTGTTTTGTAAATTACCGTCGCATTATTTAACAAGAGCTCATTCTTAACTAA
TAAAAGCCGCTTGTGGAAAAAAA
| PRINTS |
Homeobox_antennapedia (IPR017995) - T[101-108] 2.1E-5 - T[122-137] 2.1E-5 |
| ProSitePatterns |
Homeobox_Antennapedia_CS (IPR001827) - T[102-107] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[103-179] 1.84E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[119-179] 21.751 |
| SMART |
Homeobox_dom (IPR001356) - T[121-183] 3.0E-26 |
| Pfam |
Homeobox_dom (IPR001356) - T[122-178] 9.7E-23 |
| CDD |
Homeobox_dom (IPR001356) - T[122-180] 1.26977E-25 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[143-154] 1.3E-8 - T[158-168] 1.3E-8 - T[168-177] 1.3E-8 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[154-177] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXA4_HUMAN | 84.783 % | 161 | 7.43E-47 |
| HXC4_HUMAN | 73.043 % | 168 | 3.89E-50 |
| HXB4_HUMAN | 77.083 % | 160 | 2.94E-47 |
