- Transcript 'KH2012:KH.C1.922.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.922.v1.A.ND1-1
Possible name(s)
BARHL1; BARHL2; TLX1
Gene model
Location
KhC1 [824,050 / 834,047]
Amino acid sequence
Length: 602
>KH.C1.922.v1.A.ND1-1
RVVARMDSSKSEDQTTMGQISKNMQVPSHVNSKDKQWQSKIFSPAREISLQNEQKTSQSK
FHPYVRPQTSNSENFRHLIPYFPPSILSGSCPSAWGRNDQIPEDKRRLNNQIPSDHAPIP
GDQNSRSNLDQKKLEKQKEANETEARKVENFEFLQQQRFGAKHKMAHACNATMNGEDNMN
TKPTTTLGLDNPIHNSNQHDEENVHVVTSKMSFPSQGVAQETNDVHDEILDVVGAAQSSL
SPCVTSPATSHDDVTKQLLCERESSRVYSPQNEIKKRPRTAFTPEQIKRLEAEFHRNKYL
SVGKRMELSKALKLTETQIKIWFQNRRTKWKREYLSEWEVWAHQNYYAMHGLYGAAAFGG
KPSPSFPQQAVRNPAFVGPPNPMLPQFAKPGFVPTPMTNAGLASQHYSMLRNHLTNENAL
LDKAGEYQKQLEQHPMNFPRLFPPNPHLPGFPPTYNPVLPPITYYMPQQATNESVSPRDN
SPLSSDRSPNPTPPPSESPPSNDTNQRNFQKSPDLHSGFQLPTLHRPRVALPGTFPPTHH
GFLPNLIAGGALLRPYSLPPSFSSSLPILGVSRPPGHMTAPSPIGQLTVPPRVPVSPTTL
RR
Nucleotide sequence
Length: 2,172
>KH2012:KH.C1.922.v1.A.ND1-1
GCGAGTGGTCGCACGTATGGATAGTAGTAAGAGTGAAGACCAAACGACCATGGGTCAGAT
ATCTAAGAATATGCAAGTTCCCAGCCATGTAAACAGCAAAGATAAGCAATGGCAAAGCAA
GATTTTCTCGCCGGCGAGGGAAATAAGTCTTCAGAACGAGCAGAAGACGTCGCAGAGCAA
ATTCCATCCCTATGTTAGACCACAGACGTCGAACTCTGAAAACTTCCGCCATTTAATCCC
GTATTTTCCGCCGAGCATTTTGTCCGGGTCCTGCCCATCTGCGTGGGGACGAAACGACCA
AATACCAGAAGATAAACGACGCCTTAACAACCAAATACCTTCGGACCATGCACCCATACC
CGGTGATCAAAACTCCAGGTCAAATCTAGACCAAAAAAAGTTGGAAAAGCAAAAAGAAGC
GAACGAGACCGAAGCCAGAAAAGTTGAGAACTTTGAATTTCTTCAGCAGCAGCGATTCGG
AGCAAAACACAAAATGGCGCATGCTTGCAATGCTACGATGAACGGAGAAGACAATATGAA
TACGAAACCTACTACAACATTAGGATTGGACAATCCAATACACAATTCAAATCAGCATGA
TGAGGAAAACGTGCACGTAGTGACTTCGAAGATGTCGTTTCCCTCACAAGGTGTCGCACA
AGAAACAAACGACGTTCATGATGAAATTCTTGATGTGGTCGGTGCGGCACAATCGAGCTT
GTCGCCTTGTGTGACGTCACCAGCTACGTCACACGATGACGTCACGAAGCAGCTTCTGTG
TGAAAGAGAATCTTCTCGAGTTTACTCCCCACAAAACGAGATCAAGAAACGACCTAGAAC
AGCCTTCACTCCCGAACAAATAAAACGACTCGAAGCTGAGTTTCATAGAAATAAGTATCT
CTCAGTTGGAAAACGAATGGAATTGTCAAAAGCGCTAAAACTGACAGAAACGCAGATCAA
AATATGGTTTCAAAACCGACGTACAAAATGGAAGCGTGAATATCTAAGCGAGTGGGAGGT
ATGGGCTCATCAGAATTATTACGCCATGCACGGCTTGTACGGCGCAGCTGCTTTTGGCGG
GAAGCCAAGCCCTAGTTTCCCGCAGCAAGCCGTTAGAAACCCGGCCTTCGTGGGACCACC
GAACCCTATGTTACCGCAGTTTGCAAAGCCTGGTTTCGTACCTACCCCAATGACCAACGC
TGGCCTAGCGTCGCAGCATTATTCTATGTTGCGTAACCACCTAACGAACGAGAACGCCTT
ACTCGACAAAGCAGGGGAGTACCAGAAGCAATTGGAACAGCACCCAATGAACTTCCCAAG
GCTCTTCCCACCGAATCCTCACCTCCCTGGCTTTCCACCCACTTACAACCCAGTGCTCCC
ACCAATAACGTACTACATGCCACAACAAGCGACCAACGAGTCAGTATCGCCACGAGACAA
CAGCCCTCTATCCTCAGATCGCTCCCCTAACCCTACTCCACCGCCTTCCGAAAGCCCGCC
ATCTAACGACACGAATCAACGAAACTTCCAGAAATCCCCGGACCTTCACTCAGGTTTCCA
ACTTCCTACCTTACACCGACCAAGGGTCGCCTTACCAGGGACGTTCCCACCCACCCACCA
TGGTTTCCTCCCCAACCTTATAGCAGGAGGGGCCCTCCTCCGCCCTTACTCCCTCCCCCC
ATCTTTTTCGAGCTCCCTCCCGATTCTGGGAGTTTCACGCCCCCCAGGTCACATGACAGC
GCCGTCTCCTATTGGTCAGTTAACCGTTCCTCCCCGCGTACCCGTGTCGCCCACTACCTT
ACGACGTTAAACGTCTTCCTAGTAATTTCAAACACTATTTTTAAAGTACTCGTTTTTTAT
TCTTTCTTCCCGCTTAAATACTGTGTTATTAGCAGTCATGAGTTTAGTTTGAAATTCTCC
CGAAATTCGCTTTTCTATCACCGCCTGCCATCTGTTGTTTTAAATCATTTTTAGCGTTTT
CGGCAGCAGCCTGTACTAGCATTCGTGCCGGACCACCAAAGTATCGTAATTATCAAATTA
AGCCGCTTCCCACTTTTAGGTATTTATTTATATTCTGTCGCTATCCGTCTTGCTTATACG
ATGCGGTTGTATATAATCAATGGCCCGGCCCAAGTGTCTGCTGGCGCGGACCTAATAAAA
TACGAGGCACCT
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[264-333] 2.61E-24 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[273-333] 21.589 |
| SMART |
Homeobox_dom (IPR001356) - T[275-337] 2.4E-27 |
| CDD |
Homeobox_dom (IPR001356) - T[276-333] 4.20808E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[276-332] 1.4E-22 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[297-308] 7.7E-7 - T[312-322] 7.7E-7 - T[322-331] 7.7E-7 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[308-331] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TLX1_HUMAN | 57.576 % | 85.5 | 3.76E-18 |
| BARH1_HUMAN | 47.458 % | 90.9 | 6.08E-20 |
| BARH2_HUMAN | 46.739 % | 87.4 | 1.68E-18 |
