- Transcript 'KH2012:KH.C1.83.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C1.83.v1.A.nonSL58-1
Possible name(s)
POC1B; RACK1; WDR5B
Gene model
Location
KhC1 [9,714,254 / 9,717,981]
Amino acid sequence
Length: 296
>KH.C1.83.v1.A.nonSL58-1
IPEMILSASRDQSLIVWKLTRDENTYGVMNRRLCGHSHFVSDVVISSDGQFALSGSWDFD
LRLWNLQQGVTTRRFCGHTKDVMSVAFSGDNRQIISASRDGTIKLWNTLGQCKYTIMEDS
HTDWVSCVQFSPNPNTPIIVSSGWDKVVKVWNLTNCKLKTNHYGHTAFINSVTVSPDGSL
CASGGKDGQAMLWDLSEGKHLYTLSNGDSEIHALAFSPNRYWLCAACGPTIKIWDLEGKA
LLDELRPELINLNSKAGQPECLSLAWSPDGQTLFAGYTDNLIRVWQVSILASQSAQ
Nucleotide sequence
Length: 1,061
>KH2012:KH.C1.83.v1.A.nonSL58-1
ATTCCAGAAATGATTCTGTCTGCCTCCAGGGATCAGTCTCTGATCGTATGGAAACTGACT
CGGGATGAGAACACGTACGGCGTTATGAACCGAAGACTGTGTGGTCACTCACACTTTGTG
TCGGACGTCGTTATTTCATCTGATGGACAATTTGCTCTCTCTGGTTCATGGGATTTCGAT
CTTAGGCTCTGGAACTTGCAACAGGGAGTTACCACCCGTCGTTTCTGCGGGCACACCAAG
GATGTTATGTCGGTCGCTTTCTCCGGTGACAACCGACAGATCATTTCCGCTTCCCGTGAC
GGAACCATCAAGTTGTGGAACACCCTCGGTCAATGCAAATATACCATCATGGAGGACAGT
CACACTGACTGGGTATCGTGCGTTCAATTCTCCCCGAACCCCAACACCCCAATCATCGTT
TCCAGCGGCTGGGATAAAGTGGTCAAGGTTTGGAACTTGACTAACTGCAAGCTGAAGACC
AACCACTACGGGCACACAGCGTTCATTAACTCTGTGACTGTCTCACCTGATGGCTCTCTT
TGTGCCTCCGGTGGTAAAGATGGACAAGCTATGTTGTGGGATCTTAGTGAAGGCAAACAC
CTTTACACTTTGAGCAATGGTGATAGTGAAATCCACGCTCTTGCTTTCTCACCCAACCGA
TACTGGCTTTGTGCTGCTTGTGGGCCAACCATTAAGATCTGGGATTTGGAAGGCAAGGCT
CTTCTTGATGAACTACGACCAGAGTTAATCAACCTAAACAGCAAGGCTGGACAACCTGAG
TGTTTGTCATTGGCATGGTCACCTGATGGACAGACCCTATTCGCTGGTTACACTGATAAC
CTTATCCGTGTGTGGCAAGTTTCAATCCTGGCTAGCCAGTCAGCACAGTAATGTGACGAA
TAAAGAAACTTAAACTTGAAGCTCATGTTTTTTTTGGTGACTATAGGAGAAAATCAAGCT
CTAGTATGTTAGTTTGAAACGCAATGCGAATGAGTGTATATTTGAAGTGCTTTGAAAAGA
TACATAGGCGTAATGAATAAAAGGTTGGAACGGTTACAAAT
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-295] 53.837 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-291] 6.2E-121 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[4-286] 1.14E-69 |
| SMART |
WD40_repeat (IPR001680) - T[26-65] 0.0022 - T[68-107] 1.2E-9 - T[109-152] 1.4E-7 - T[155-194] 2.5E-8 - T[197-235] 0.0098 - T[246-286] 0.041 |
| Pfam |
WD40_repeat (IPR001680) - T[32-65] 3.1E-5 - T[72-107] 7.0E-8 - T[112-152] 1.5E-5 - T[162-194] 1.3E-6 - T[199-235] 5.1E-5 - T[263-285] 8.6E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[33-74] 12.747 - T[75-107] 15.087 - T[118-161] 11.979 - T[162-203] 14.92 - T[263-288] 10.375 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[52-66] . - T[94-108] . - T[139-153] . - T[181-195] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[94-108] 1.5E-7 - T[139-153] 1.5E-7 - T[181-195] 1.5E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 30.769 % | 115 | 4.27E-30 |
| WDR5B_HUMAN | 30.104 % | 119 | 1.45E-31 |
| RACK1_HUMAN | 76.125 % | 466 | 4.32E-167 |