- Transcript 'KH2012:KH.C1.83.v1.A...' >
- Transcript 'KH2012:KH.C1.83.v1.A...' >
- Transcript 'KH2012:KH.C1.83.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C1.83.v1.A.nonSL50-1
Possible name(s)
POC1B; RACK1; WDR5B
Gene model
Location
KhC1 [9,714,254 / 9,718,124]
Amino acid sequence
Length: 324
>KH.C1.83.v1.A.nonSL50-1
NMATEQMTLRGTLKGHKGWVTKIATTPAIPEMILSASRDQSLIVWKLTRDENTYGVMNRR
LCGHSHFVSDVVISSDGQFALSGSWDFDLRLWNLQQGVTTRRFCGHTKDVMSVAFSGDNR
QIISASRDGTIKLWNTLGQCKYTIMEDSHTDWVSCVQFSPNPNTPIIVSSGWDKVVKVWN
LTNCKLKTNHYGHTAFINSVTVSPDGSLCASGGKDGQAMLWDLSEGKHLYTLSNGDSEIH
ALAFSPNRYWLCAACGPTIKIWDLEGKALLDELRPELINLNSKAGQPECLSLAWSPDGQT
LFAGYTDNLIRVWQVSILASQSAQ
Nucleotide sequence
Length: 1,204
>KH2012:KH.C1.83.v1.A.nonSL50-1
TGTAGGTTAGTTGGGAGCTTTATCTGCCGGAATCTGACCAACTACAGATTCAATATTAAA
ATATGGCTACGGAACAAATGACCCTTAGGGGTACCCTTAAAGGGCATAAAGGATGGGTGA
CAAAAATCGCTACAACCCCAGCTATTCCAGAAATGATTCTGTCTGCCTCCAGGGATCAGT
CTCTGATCGTATGGAAACTGACTCGGGATGAGAACACGTACGGCGTTATGAACCGAAGAC
TGTGTGGTCACTCACACTTTGTGTCGGACGTCGTTATTTCATCTGATGGACAATTTGCTC
TCTCTGGTTCATGGGATTTCGATCTTAGGCTCTGGAACTTGCAACAGGGAGTTACCACCC
GTCGTTTCTGCGGGCACACCAAGGATGTTATGTCGGTCGCTTTCTCCGGTGACAACCGAC
AGATCATTTCCGCTTCCCGTGACGGAACCATCAAGTTGTGGAACACCCTCGGTCAATGCA
AATATACCATCATGGAGGACAGTCACACTGACTGGGTATCGTGCGTTCAATTCTCCCCGA
ACCCCAACACCCCAATCATCGTTTCCAGCGGCTGGGATAAAGTGGTCAAGGTTTGGAACT
TGACTAACTGCAAGCTGAAGACCAACCACTACGGGCACACAGCGTTCATTAACTCTGTGA
CTGTCTCACCTGATGGCTCTCTTTGTGCCTCCGGTGGTAAAGATGGACAAGCTATGTTGT
GGGATCTTAGTGAAGGCAAACACCTTTACACTTTGAGCAATGGTGATAGTGAAATCCACG
CTCTTGCTTTCTCACCCAACCGATACTGGCTTTGTGCTGCTTGTGGGCCAACCATTAAGA
TCTGGGATTTGGAAGGCAAGGCTCTTCTTGATGAACTACGACCAGAGTTAATCAACCTAA
ACAGCAAGGCTGGACAACCTGAGTGTTTGTCATTGGCATGGTCACCTGATGGACAGACCC
TATTCGCTGGTTACACTGATAACCTTATCCGTGTGTGGCAAGTTTCAATCCTGGCTAGCC
AGTCAGCACAGTAATGTGACGAATAAAGAAACTTAAACTTGAAGCTCATGTTTTTTTTGG
TGACTATAGGAGAAAATCAAGCTCTAGTATGTTAGTTTGAAACGCAATGCGAATGAGTGT
ATATTTGAAGTGCTTTGAAAAGATACATAGGCGTAATGAATAAAAGGTTGGAACGGTTAC
AAAT
| SMART |
WD40_repeat (IPR001680) - T[6-46] 7.8E-5 - T[54-93] 0.0022 - T[96-135] 1.2E-9 - T[137-180] 1.4E-7 - T[183-222] 2.5E-8 - T[225-263] 0.0098 - T[274-314] 0.041 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[6-314] 7.12E-75 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[10-319] 2.9E-128 |
| Pfam |
WD40_repeat (IPR001680) - T[11-46] 0.14 - T[60-93] 3.6E-5 - T[100-135] 7.9E-8 - T[140-180] 1.7E-5 - T[190-222] 1.5E-6 - T[227-263] 5.8E-5 - T[291-313] 9.7E-4 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[13-323] 56.474 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[13-55] 11.177 - T[61-102] 12.747 - T[103-135] 15.087 - T[146-189] 11.979 - T[190-231] 14.92 - T[291-316] 10.375 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[80-94] . - T[122-136] . - T[167-181] . - T[209-223] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[122-136] 1.8E-7 - T[167-181] 1.8E-7 - T[209-223] 1.8E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5B_HUMAN | 30.137 % | 120 | 1.21E-31 |
| POC1B_HUMAN | 29.653 % | 130 | 2.68E-34 |
| RACK1_HUMAN | 77.07 % | 511 | 0 |