- Region 'REG00001591' >
- Region 'REG00000041' >
- Transcript 'KH2012:KH.L4.23.v1.A...' >
- Transcript 'KH2012:KH.C1.508.v4....'
Transcript Model
Transcript Id
KH2012:KH.C1.508.v4.A.SL1-2
Possible name(s)
ITGB1; ITGB6; ITGB7
Gene model
Location
KhC1 [4,634,593 / 4,651,018]
Amino acid sequence
Length: 389
>KH.C1.508.v4.A.SL1-2
LQAIPMKMNYITVLYWCVYMALVKAATNPCIDSKAKSCSDCISIPGCAWCEDSNYANNPN
VVISRCDLPENLEVEGERCPEHAIINPRSNQTIDSKGNKPHSNVGESAVGKATQIRPQII
NSRIRPGDPLNIELSFKQAEDYPVDLYYLLDLSKSMENDLNSLRALGRELGTSMQNITRD
FRLGFGSFIDKTVMPYISTVPAKIRNPCNDKAPCVPTYSFHNDLPLTPEIDAFVNSVNNV
THSSNLDNPEGGLDAMMQAIVCKEKINWRKDATHLLVYSTDASFHYAGDGKLGGIVLPND
GNCYLDDNGHYYNANAMRRLASKTELVPVRLFSLMTSLALVLLLLLKRRTRKNLAFTMSD
FGKYENETITICTFYMPGYSCSIIERNVN
Nucleotide sequence
Length: 1,267
>KH2012:KH.C1.508.v4.A.SL1-2
GTTTAATTATAACTTTTACTTAATGTATGAAGTATTAATGTGATTACAAGCAATTCCAAT
GAAAATGAATTATATTACAGTGTTATATTGGTGTGTTTATATGGCTCTAGTTAAAGCTGC
AACCAACCCATGTATCGATAGCAAGGCCAAATCGTGCAGTGATTGTATCAGCATACCTGG
ATGTGCATGGTGTGAAGATTCCAATTATGCAAACAATCCTAATGTTGTTATTTCTCGATG
TGATTTACCTGAAAACCTGGAAGTGGAGGGTGAAAGATGTCCAGAACATGCAATTATTAA
TCCAAGGTCTAATCAAACTATTGACAGTAAAGGAAACAAACCTCATTCAAATGTGGGCGA
ATCAGCTGTGGGTAAAGCGACTCAGATTCGTCCTCAGATTATTAATTCAAGGATAAGACC
AGGTGATCCCCTGAATATTGAACTTTCGTTTAAACAAGCTGAAGATTATCCGGTTGATCT
TTATTATCTGCTTGATCTTTCAAAATCTATGGAAAATGATCTTAACTCGTTAAGAGCACT
AGGTCGAGAGTTAGGAACCAGTATGCAGAATATCACAAGAGATTTTCGTCTTGGATTTGG
TTCATTTATCGATAAAACAGTCATGCCGTACATTTCAACTGTACCTGCCAAAATTAGAAA
CCCATGCAATGATAAAGCACCATGTGTTCCAACATATAGTTTCCACAATGACTTACCTTT
AACTCCTGAGATCGATGCCTTTGTTAACTCTGTAAATAATGTAACACACTCTTCCAACCT
TGATAATCCTGAGGGTGGTCTTGATGCTATGATGCAAGCTATTGTGTGTAAGGAAAAAAT
CAACTGGAGAAAAGATGCAACACATCTTCTTGTGTATTCGACTGATGCGAGTTTTCATTA
TGCTGGGGATGGAAAGCTTGGTGGAATTGTTCTTCCCAACGATGGAAATTGTTACTTGGA
TGATAACGGTCATTATTATAATGCTAATGCGATGCGGCGACTTGCATCTAAAACGGAACT
TGTTCCCGTGCGCCTTTTCTCTTTAATGACATCATTAGCGCTCGTACTCCTGCTATTACT
TAAACGCCGCACTCGAAAAAACTTAGCTTTTACCATGTCCGATTTTGGAAAATATGAAAA
CGAAACTATCACGATTTGCACATTTTACATGCCTGGCTACAGTTGTAGTATCATTGAACG
AAATGTGAATTAAACTCGACTGTACTCTTGAAGAGATATGTACTCGTCAATACAACGTTT
TAATCTA
| Pfam |
Integrin_beta_N (IPR033760) - T[28-79] 5.4E-10 |
| PRINTS |
Integrin_bsu (IPR015812) - T[34-50] 3.8E-51 - T[114-127] 3.8E-51 - T[142-160] 3.8E-51 - T[182-201] 3.8E-51 - T[214-233] 3.8E-51 - T[247-269] 3.8E-51 - T[274-289] 3.8E-51 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[37-381] 4.5E-95 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[139-322] 4.2E-58 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[139-319] 5.9E-78 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[139-317] 6.2E-81 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 40.541 % | 256 | 2.21E-78 |
| ITB6_HUMAN | 45.205 % | 253 | 2.5E-77 |
| ITB1_HUMAN | 43.714 % | 281 | 8.75E-88 |