- Molecular Tool 'NotRNA' >
- Transcript 'KH2012:KH.C5.109.v6....' >
- Transcript 'KH2012:KH.L4.23.v2.A...' >
- Transcript 'KH2012:KH.C5.109.v1....' >
- Transcript 'KH2012:KH.C1.508.v2....'
Transcript Model
Transcript Id
KH2012:KH.C1.508.v2.A.SL1-1
Possible name(s)
ITGB1; ITGB6; ITGB7
Gene model
Location
KhC1 [4,628,922 / 4,651,018]
Amino acid sequence
Length: 802
>KH.C1.508.v2.A.SL1-1
LQAIPMKMNYITVLYWCVYMALVKAATNPCIDSKAKSCSDCISIPGCAWCEDSNYANNPN
VVISRCDLPENLEVEGERCPEHAIINPRSNQTIDSKGNKPHSNVGESAVGKATQIRPQII
NSRIRPGDPLNIELSFKQAEDYPVDLYYLLDLSKSMENDLNSLRALGRELGTSMQNITRD
FRLGFGSFIDKTVMPYISTVPAKIRNPCNDKAPCVPTYSFHNDLPLTPEIDAFVNSVNNV
THSSNLDNPEGGLDAMMQAIVCKEKINWRKDATHLLVYSTDASFHYAGDGKLGGIVLPND
GNCYLDDNGHYYNANAMDYPSIGHLVRKITSHNIQPIFAVTTSVIQTYTNLQKMIPKSVV
GELSGDSSNIIQLIQNAYNDLKGQVLLEIRAPPEVTVSSQTAHCQNQTIPGMQCEGVKLG
DIVNFTFTLSTEKCLKSPVQVLVSPYGYNEVVTINVESHCDCQCEETQAPTTNCSGHGVY
ECGSCVCETGFTGLDCSCDQKDVLGIESYLANCTDPATGVVCNSGGECQCGSCICKQYAN
KKIDGKYCECDNTTCDRAGARVCNGFGKCNCGVCECQNGWKGKACDCTLDQTECYDLSPD
AVDSSKPCNGNGECECGQCVCNSRGGAKFRGQYCKTKPLVICDIHKDCIQCKAWKTGNYN
TTECEKQCTKYNVTKMSKEYQYSGYTNECRFTDLTDDCNYQATFEEIDGIIMVEVEPDKT
CTTYANPVYIIIGIIAAIVGIGLAILLIWKLLTSIKDAREYKNFQKESQNPKWQGGENPI
FKKATSTFKNPMYSGGKTAGNL
Nucleotide sequence
Length: 2,810
>KH2012:KH.C1.508.v2.A.SL1-1
GTTTAATTATAACTTTTACTTAATGTATGAAGTATTAATGTGATTACAAGCAATTCCAAT
GAAAATGAATTATATTACAGTGTTATATTGGTGTGTTTATATGGCTCTAGTTAAAGCTGC
AACCAACCCATGTATCGATAGCAAGGCCAAATCGTGCAGTGATTGTATCAGCATACCTGG
ATGTGCATGGTGTGAAGATTCCAATTATGCAAACAATCCTAATGTTGTTATTTCTCGATG
TGATTTACCTGAAAACCTGGAAGTGGAGGGTGAAAGATGTCCAGAACATGCAATTATTAA
TCCAAGGTCTAATCAAACTATTGACAGTAAAGGAAACAAACCTCATTCAAATGTGGGCGA
ATCAGCTGTGGGTAAAGCGACTCAGATTCGTCCTCAGATTATTAATTCAAGGATAAGACC
AGGTGATCCCCTGAATATTGAACTTTCGTTTAAACAAGCTGAAGATTATCCGGTTGATCT
TTATTATCTGCTTGATCTTTCAAAATCTATGGAAAATGATCTTAACTCGTTAAGAGCACT
AGGTCGAGAGTTAGGAACCAGTATGCAGAATATCACAAGAGATTTTCGTCTTGGATTTGG
TTCATTTATCGATAAAACAGTCATGCCGTACATTTCAACTGTACCTGCCAAAATTAGAAA
CCCATGCAATGATAAAGCACCATGTGTTCCAACATATAGTTTCCACAATGACTTACCTTT
AACTCCTGAGATCGATGCCTTTGTTAACTCTGTAAATAATGTAACACACTCTTCCAACCT
TGATAATCCTGAGGGTGGTCTTGATGCTATGATGCAAGCTATTGTGTGTAAGGAAAAAAT
CAACTGGAGAAAAGATGCAACACATCTTCTTGTGTATTCGACTGATGCGAGTTTTCATTA
TGCTGGGGATGGAAAGCTTGGTGGAATTGTTCTTCCCAACGATGGAAATTGTTACTTGGA
TGATAACGGTCATTATTATAATGCTAATGCGATGGACTATCCTTCCATTGGTCATCTTGT
AAGAAAGATAACCAGTCACAACATACAACCAATCTTTGCTGTAACTACCAGTGTTATACA
AACTTACACGAATTTACAAAAAATGATTCCTAAATCTGTGGTTGGTGAATTATCTGGAGA
TTCATCAAATATTATTCAACTTATACAGAATGCTTACAATGACCTAAAAGGGCAGGTTCT
TCTTGAAATCAGAGCACCACCAGAGGTCACTGTTTCATCACAAACAGCTCATTGTCAGAA
CCAAACCATACCTGGCATGCAATGTGAGGGAGTTAAACTTGGAGACATTGTAAACTTTAC
ATTTACATTGTCAACTGAGAAATGTTTGAAATCGCCAGTTCAAGTTTTGGTTTCTCCATA
TGGTTATAATGAAGTTGTAACGATAAATGTTGAATCACATTGTGATTGTCAGTGCGAAGA
AACACAGGCACCAACAACTAATTGTTCTGGTCATGGTGTTTACGAATGTGGATCATGCGT
TTGTGAAACCGGGTTTACTGGTCTTGACTGCTCCTGTGATCAGAAAGATGTTCTTGGAAT
TGAATCTTATCTTGCTAACTGCACAGATCCAGCAACCGGTGTTGTCTGCAACAGTGGTGG
AGAGTGTCAATGTGGATCCTGCATTTGCAAACAATATGCAAACAAGAAAATCGATGGAAA
ATATTGTGAGTGTGATAATACAACATGTGATAGAGCTGGAGCAAGGGTTTGTAATGGTTT
TGGTAAATGCAACTGTGGTGTTTGTGAATGTCAAAATGGTTGGAAAGGCAAGGCTTGTGA
TTGCACACTAGATCAAACTGAATGTTACGATTTAAGTCCAGACGCAGTGGACTCCAGCAA
ACCATGTAACGGCAACGGCGAATGTGAATGCGGACAGTGTGTTTGTAATAGTCGTGGTGG
AGCAAAGTTTCGCGGTCAGTATTGCAAAACAAAACCATTGGTTATATGTGATATACATAA
AGATTGCATTCAATGCAAAGCTTGGAAAACTGGCAACTACAATACAACAGAGTGTGAAAA
ACAATGCACAAAGTATAATGTTACAAAAATGTCCAAGGAATATCAGTACAGTGGTTACAC
TAATGAATGTCGATTCACCGACCTCACAGATGACTGTAATTATCAAGCCACGTTTGAAGA
AATTGACGGAATCATCATGGTAGAAGTAGAACCTGACAAAACTTGTACGACCTATGCCAA
TCCAGTCTACATAATTATTGGAATTATTGCTGCTATTGTTGGTATTGGGCTTGCTATTCT
GCTTATATGGAAACTTTTAACTTCCATCAAAGATGCAAGGGAATACAAAAACTTCCAGAA
GGAATCTCAAAACCCTAAGTGGCAGGGGGGAGAAAATCCTATTTTCAAAAAAGCAACTTC
TACCTTTAAAAATCCAATGTATTCTGGTGGGAAAACTGCTGGAAATCTGTGATGACGGTA
CTAATATGCATTCCTGAAATTAATTCAACATTCAAGAATGTTTTGATAGTAAAAATTATT
GTGGATTTAAACTGTATTATTTAAAATTTGATAAAGAATTTAAAGTTAAATAAAAAACTT
TTGCTTTTTTTTTTTTTCATACCAAATTGCTGTTTACTTGGATACTAGACAGCAATGATT
GCTTTTTAGTTGTTTTGCAGTATAAATCATGTTAAAAATTGTTTGTAAAACCAGCAACAA
ATATTTCGTATTAATAAAACATCTGATGTATGTTTTAATTACAAATCATTACTTGTTTAT
ACGATCTGAACTTATTTTTGATTTTTTCTAAAAAATATGTTAACAATACT
| PIRSF |
Integrin_bsu (IPR015812) - T[4-797] 2.5E-252 |
| PANTHER |
Integrin_bsu (IPR015812) - T[21-797] 7.8E-245 |
| PRINTS |
Integrin_bsu (IPR015812) - T[34-50] 1.0E-101 - T[114-127] 1.0E-101 - T[142-160] 1.0E-101 - T[182-201] 1.0E-101 - T[214-233] 1.0E-101 - T[247-269] 1.0E-101 - T[274-289] 1.0E-101 - T[318-341] 1.0E-101 - T[354-378] 1.0E-101 - T[608-621] 1.0E-101 - T[725-742] 1.0E-101 - T[742-760] 1.0E-101 - T[777-787] 1.0E-101 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[37-462] 5.7E-201 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[139-382] 5.0E-79 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[139-384] 1.4E-107 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[141-382] 3.5E-140 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[398-466] 6.8E-14 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[608-621] . |
| SUPERFAMILY |
Integrin_bsu_tail_dom_sf (IPR036349) - T[641-721] 1.57E-6 |
| Pfam |
Integrin_bsu_tail (IPR012896) - T[642-723] 4.0E-10 |
| SMART |
Integrin_bsu_tail (IPR012896) - T[642-726] 9.4E-21 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[750-793] 7.9E-21 |
| SMART |
Integrin_bsu_cyt_dom (IPR014836) - T[750-796] 1.2E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 38.132 % | 539 | 0 |
| ITB6_HUMAN | 38.54 % | 524 | 2.24E-175 |
| ITB1_HUMAN | 41.82 % | 580 | 0 |