- Region 'REG00000042' >
- Transcript 'KH2012:KH.C1.508.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.508.v1.A.SL2-1
Possible name(s)
ITGB1; ITGB6; ITGB7
Gene model
Location
KhC1 [4,628,922 / 4,650,938]
Amino acid sequence
Length: 789
>KH.C1.508.v1.A.SL2-1
LYWCVYMALVKAATNPCIDSKAKSCSDCISIPGCAWCEDSNYANNPNVVISRCDLPENLE
VEGERCPEHAIINPRSNQTIDSKGNKPHSNVGESAVGKATQIRPQIINSRIRPGDPLNIE
LSFKQAEDYPVDLYYLLDLSKSMENDLNSLRALGRELGTSMQNITRDFRLGFGSFIDKTV
MPYISTVPAKIRNPCNDKAPCVPTYSFHNDLPLTPEIDAFVNSVNNVTHSSNLDNPEGGL
DAMMQAIVCKEKINWRKDATHLLVYSTDASFHYAGDGKLGGIVLPNDGNCYLDDNGHYYN
ANAMDYPSIGHLVRKITSHNIQPIFAVTTSVIQTYTNLQKMIPKSVVGELSGDSSNIIQL
IQNAYNDLKGQVLLEIRAPPEVTVSSQTAHCQNQTIPGMQCEGVKLGDIVNFTFTLSTEK
CLKSPVQVLVSPYGYNEVVTINVESHCDCQCEETQAPTTNCSGHGVYECGSCVCETGFTG
LDCSCDQKDVLGIESYLANCTDPATGVVCNSGGECQCGSCICKQYANKKIDGKYCECDNT
TCDRAGARVCNGFGKCNCGVCECQNGWKGKACDCTLDQTECYDLSPDAVDSSKPCNGNGE
CECGQCVCNSRGGAKFRGQYCKTKPLVICDIHKDCIQCKAWKTGNYNTTECEKQCTKYNV
TKMSKEYQYSGYTNECRFTDLTDDCNYQATFEEIDGIIMVEVEPDKTCTTYANPVYIIIG
IIAAIVGIGLAILLIWKLLTSIKDAREYKNFQKESQNPKWQGGENPIFKKATSTFKNPMY
SGGKTAGNL
Nucleotide sequence
Length: 2,730
>KH2012:KH.C1.508.v1.A.SL2-1
TGTTATATTGGTGTGTTTATATGGCTCTAGTTAAAGCTGCAACCAACCCATGTATCGATA
GCAAGGCCAAATCGTGCAGTGATTGTATCAGCATACCTGGATGTGCATGGTGTGAAGATT
CCAATTATGCAAACAATCCTAATGTTGTTATTTCTCGATGTGATTTACCTGAAAACCTGG
AAGTGGAGGGTGAAAGATGTCCAGAACATGCAATTATTAATCCAAGGTCTAATCAAACTA
TTGACAGTAAAGGAAACAAACCTCATTCAAATGTGGGCGAATCAGCTGTGGGTAAAGCGA
CTCAGATTCGTCCTCAGATTATTAATTCAAGGATAAGACCAGGTGATCCCCTGAATATTG
AACTTTCGTTTAAACAAGCTGAAGATTATCCGGTTGATCTTTATTATCTGCTTGATCTTT
CAAAATCTATGGAAAATGATCTTAACTCGTTAAGAGCACTAGGTCGAGAGTTAGGAACCA
GTATGCAGAATATCACAAGAGATTTTCGTCTTGGATTTGGTTCATTTATCGATAAAACAG
TCATGCCGTACATTTCAACTGTACCTGCCAAAATTAGAAACCCATGCAATGATAAAGCAC
CATGTGTTCCAACATATAGTTTCCACAATGACTTACCTTTAACTCCTGAGATCGATGCCT
TTGTTAACTCTGTAAATAATGTAACACACTCTTCCAACCTTGATAATCCTGAGGGTGGTC
TTGATGCTATGATGCAAGCTATTGTGTGTAAGGAAAAAATCAACTGGAGAAAAGATGCAA
CACATCTTCTTGTGTATTCGACTGATGCGAGTTTTCATTATGCTGGGGATGGAAAGCTTG
GTGGAATTGTTCTTCCCAACGATGGAAATTGTTACTTGGATGATAACGGTCATTATTATA
ATGCTAATGCGATGGACTATCCTTCCATTGGTCATCTTGTAAGAAAGATAACCAGTCACA
ACATACAACCAATCTTTGCTGTAACTACCAGTGTTATACAAACTTACACGAATTTACAAA
AAATGATTCCTAAATCTGTGGTTGGTGAATTATCTGGAGATTCATCAAATATTATTCAAC
TTATACAGAATGCTTACAATGACCTAAAAGGGCAGGTTCTTCTTGAAATCAGAGCACCAC
CAGAGGTCACTGTTTCATCACAAACAGCTCATTGTCAGAACCAAACCATACCTGGCATGC
AATGTGAGGGAGTTAAACTTGGAGACATTGTAAACTTTACATTTACATTGTCAACTGAGA
AATGTTTGAAATCGCCAGTTCAAGTTTTGGTTTCTCCATATGGTTATAATGAAGTTGTAA
CGATAAATGTTGAATCACATTGTGATTGTCAGTGCGAAGAAACACAGGCACCAACAACTA
ATTGTTCTGGTCATGGTGTTTACGAATGTGGATCATGCGTTTGTGAAACCGGGTTTACTG
GTCTTGACTGCTCCTGTGATCAGAAAGATGTTCTTGGAATTGAATCTTATCTTGCTAACT
GCACAGATCCAGCAACCGGTGTTGTCTGCAACAGTGGTGGAGAGTGTCAATGTGGATCCT
GCATTTGCAAACAATATGCAAACAAGAAAATCGATGGAAAATATTGTGAGTGTGATAATA
CAACATGTGATAGAGCTGGAGCAAGGGTTTGTAATGGTTTTGGTAAATGCAACTGTGGTG
TTTGTGAATGTCAAAATGGTTGGAAAGGCAAGGCTTGTGATTGCACACTAGATCAAACTG
AATGTTACGATTTAAGTCCAGACGCAGTGGACTCCAGCAAACCATGTAACGGCAACGGCG
AATGTGAATGCGGACAGTGTGTTTGTAATAGTCGTGGTGGAGCAAAGTTTCGCGGTCAGT
ATTGCAAAACAAAACCATTGGTTATATGTGATATACATAAAGATTGCATTCAATGCAAAG
CTTGGAAAACTGGCAACTACAATACAACAGAGTGTGAAAAACAATGCACAAAGTATAATG
TTACAAAAATGTCCAAGGAATATCAGTACAGTGGTTACACTAATGAATGTCGATTCACCG
ACCTCACAGATGACTGTAATTATCAAGCCACGTTTGAAGAAATTGACGGAATCATCATGG
TAGAAGTAGAACCTGACAAAACTTGTACGACCTATGCCAATCCAGTCTACATAATTATTG
GAATTATTGCTGCTATTGTTGGTATTGGGCTTGCTATTCTGCTTATATGGAAACTTTTAA
CTTCCATCAAAGATGCAAGGGAATACAAAAACTTCCAGAAGGAATCTCAAAACCCTAAGT
GGCAGGGGGGAGAAAATCCTATTTTCAAAAAAGCAACTTCTACCTTTAAAAATCCAATGT
ATTCTGGTGGGAAAACTGCTGGAAATCTGTGATGACGGTACTAATATGCATTCCTGAAAT
TAATTCAACATTCAAGAATGTTTTGATAGTAAAAATTATTGTGGATTTAAACTGTATTAT
TTAAAATTTGATAAAGAATTTAAAGTTAAATAAAAAACTTTTGCTTTTTTTTTTTTTCAT
ACCAAATTGCTGTTTACTTGGATACTAGACAGCAATGATTGCTTTTTAGTTGTTTTGCAG
TATAAATCATGTTAAAAATTGTTTGTAAAACCAGCAACAAATATTTCGTATTAATAAAAC
ATCTGATGTATGTTTTAATTACAAATCATTACTTGTTTATACGATCTGAACTTATTTTTG
ATTTTTTCTAAAAAATATGTTAACAATACT
| PIRSF |
Integrin_bsu (IPR015812) - T[1-784] 2.8E-251 |
| PANTHER |
Integrin_bsu (IPR015812) - T[12-784] 2.3E-244 |
| PRINTS |
Integrin_bsu (IPR015812) - T[21-37] 8.5E-102 - T[101-114] 8.5E-102 - T[129-147] 8.5E-102 - T[169-188] 8.5E-102 - T[201-220] 8.5E-102 - T[234-256] 8.5E-102 - T[261-276] 8.5E-102 - T[305-328] 8.5E-102 - T[341-365] 8.5E-102 - T[595-608] 8.5E-102 - T[712-729] 8.5E-102 - T[729-747] 8.5E-102 - T[764-774] 8.5E-102 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[24-449] 5.7E-201 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[126-369] 5.0E-79 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[126-371] 1.3E-107 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[128-369] 3.4E-140 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[385-453] 6.8E-14 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[595-608] . |
| SUPERFAMILY |
Integrin_bsu_tail_dom_sf (IPR036349) - T[628-708] 1.57E-6 |
| Pfam |
Integrin_bsu_tail (IPR012896) - T[629-710] 3.9E-10 |
| SMART |
Integrin_bsu_tail (IPR012896) - T[629-713] 9.4E-21 |
| SMART |
Integrin_bsu_cyt_dom (IPR014836) - T[737-783] 1.2E-23 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[737-780] 7.7E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 38.132 % | 540 | 0 |
| ITB6_HUMAN | 38.54 % | 523 | 1.97E-175 |
| ITB1_HUMAN | 41.82 % | 579 | 0 |