- Clone 'AHC2BAA5YJ05' >
- Transcript 'KH2012:KH.C14.408.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.408.v1.A.SL1-1
Possible name(s)
CDX1; CDX2; CDX4
Gene model
Location
KhC14 [3,386,316 / 3,390,739]
Amino acid sequence
Length: 426
>KH.C14.408.v1.A.SL1-1
VHQPFETFAKETFVILERFVRKKTATIDEKRTMLCYAIDQQKSSIGQPTNMYRNPTPDPN
PSPTSNQGFFQTYPPKEDHGRYPVPNYGIPQPHASTADPFYPSSLGGEYGSQFPAPPPPH
LDAANWGPPVTYSGANFAPMMNSTWDMNSNFHPTHHPIISSAGPTYQLPTNLSPTSAVNG
DGSPGSVPTTLTGIECFSTPPEMHGAPGLPPLHASQIPPAQRRPYEWISKNAYQNTQTQQ
VGKTRTKDKYRVVYSDHQRLELEKEFRFSRYITIRRKAELAGLLCLSERQIKIWFQNRRA
KERKATKKTGEPSKDFDKDEAEAADDDITDHPMTSSPIQHMQSGCQYIPPDLSRDHGILE
SRDGGIAHASFYEMPQHGTMNYTQLNPMDIKPIIPTEAHRSLSSTSDDVTHGQPVMTSSH
GNGNDV
Nucleotide sequence
Length: 1,505
>KH2012:KH.C14.408.v1.A.SL1-1
ATTCGTATTAGGTTCATCAGCCATTTGAAACTTTTGCCAAGGAAACTTTTGTGATTCTTG
AGCGTTTTGTTCGCAAGAAGACTGCAACCATTGATGAGAAACGCACAATGTTATGTTATG
CAATTGACCAGCAGAAATCAAGCATAGGACAACCCACTAACATGTACCGCAACCCCACCC
CGGACCCGAACCCATCCCCTACCAGCAACCAGGGATTTTTCCAAACTTACCCACCGAAAG
AAGACCACGGCAGATATCCGGTACCTAACTATGGTATCCCCCAACCCCACGCTTCAACTG
CTGATCCATTTTACCCCAGCAGTTTAGGGGGCGAGTATGGGTCCCAGTTTCCAGCCCCAC
CACCGCCCCATCTTGACGCCGCAAATTGGGGGCCTCCCGTGACGTATTCGGGGGCTAATT
TTGCCCCAATGATGAATTCAACATGGGACATGAATTCGAACTTTCATCCGACCCACCACC
CCATAATAAGCAGTGCAGGACCGACATACCAACTTCCTACAAACCTATCCCCAACATCAG
CGGTGAATGGCGACGGGAGCCCCGGGTCGGTTCCGACCACTTTGACGGGGATTGAGTGCT
TCTCAACCCCGCCGGAGATGCATGGAGCGCCCGGTCTACCTCCGCTGCATGCGTCGCAGA
TTCCACCGGCACAGCGAAGGCCGTATGAGTGGATAAGTAAGAACGCATATCAGAATACTC
AAACCCAGCAAGTAGGCAAAACGCGAACTAAGGACAAATACAGAGTAGTGTATTCGGATC
ATCAAAGGCTCGAACTGGAAAAAGAGTTTCGTTTTAGTCGTTACATCACGATACGACGAA
AAGCTGAGCTCGCCGGACTGCTTTGCTTAAGCGAACGTCAGATCAAAATCTGGTTCCAGA
ACCGCAGAGCAAAAGAACGGAAAGCGACGAAAAAAACTGGCGAACCGTCCAAAGATTTTG
ACAAGGACGAAGCTGAAGCAGCCGATGATGACATCACGGATCACCCTATGACGTCATCGC
CGATCCAGCACATGCAGAGTGGCTGCCAGTATATTCCACCCGATTTATCTCGCGATCACG
GGATTTTGGAGTCGCGAGATGGCGGTATAGCGCACGCGTCGTTTTACGAAATGCCCCAGC
ACGGAACAATGAACTATACGCAACTGAATCCAATGGATATCAAGCCCATCATTCCAACCG
AAGCCCATCGCTCTCTCTCGTCCACTAGCGATGACGTAACGCACGGGCAACCCGTGATGA
CGTCATCACACGGCAACGGAAATGACGTTTGATGACGTCACACTGCACGCAGCGCGATAT
TGCAATAGTTACCTCTGTATTTATTCGTTGTTCGCACGGGGCGTTAAAAACGTTCTCGGG
ACATTTTCGCGTCGATTTTTTCCTGAACATTGCCGTTTTCTTTAACGTCAGTATATCGTA
TATGCATACAAGCTATTCCACCCTAACACTTGCTAATAAAAGCGTTAGAGGACGCCGGAA
CTACA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[235-305] 2.95E-21 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[245-305] 19.208 |
| SMART |
Homeobox_dom (IPR001356) - T[247-309] 1.7E-20 |
| Pfam |
Homeobox_dom (IPR001356) - T[249-304] 6.1E-18 |
| CDD |
Homeobox_dom (IPR001356) - T[249-304] 1.52193E-20 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[269-280] 1.2E-5 - T[284-294] 1.2E-5 - T[294-303] 1.2E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[280-303] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CDX1_HUMAN | 63.366 % | 123 | 1.43E-32 |
| CDX2_HUMAN | 72.826 % | 130 | 1.71E-34 |
| CDX4_HUMAN | 69.048 % | 119 | 6.34E-31 |