- Clone 'citb029l18' >
- Clone 'cima822180' >
- Clone 'cicl028b05' >
- Transcript 'KH2012:KH.C14.390.v1...' >
- Transcript 'KH2012:KH.C14.349.v2...'
Transcript Model
Transcript Id
KH2012:KH.C14.349.v2.A.SL2-1
Possible name(s)
TRIM24; TRIM28; TRIM33
Gene model
Location
KhC14 [869,435 / 882,458]
Amino acid sequence
Length: 705
>KH.C14.349.v2.A.SL2-1
EKNAYLKQTTVNVKATLDKVNKRNEEVTQDVLKFHNQLQELITNKSQFFLRKIDDITTQR
RNKLTTQLAMTDRLNRAVEHCISFINQAMDDRNGTALLHSKQVVSIALLRYACPHCLPML
GAYAIQPLPITKYTYRPTRVNMGMGQPQTSNINMNSNGRQDNYNQRRGGVNLNISPVNHS
IPHQQPQQQQPQQQHQQQQHQQQQYNMGNMNRMKPFVSRASVANMKQTAVNHGPIERSHS
HNAMHEHDPPTLHSPLKPNLTVTPPPHPSFMGEVASMVNNDVIPVLQMPTLNEKKQDPPH
QSPESITHAVQSPSLSSADSGFETGLNRNNDQNNLPKPDTEDHLSPPPLLDFSELIKQEA
IEEDEDMKYFDDKHETSVEEMVMSLAQEQQKEIPKTLTTPTTSPNTKAKMGETSHFSEWN
NFTENNMRKYDPNEDWCGVCNNGGDLLCCDSCPKVFHVHCHVPEILAAPPGIWQCMLCRD
LDAAVEMEMGPGKRKRVMGLQGKPLKLCERILLELFCHSKSSPFHFPVKNSVPNYYKLIK
EPMDFLKIKKKLQPGNFQHYAGCEKFLSDVYLVFTNCYLFNGEDTSLGRAAKEVQKYFYE
RVQLWLPFLKLNLDRLEEDQRQIITEAVNKQVVANEKPKPTSTDKSKPHIPYEHDSPWKP
GQDETEEDDDVIESTPSSDVSEEQTDLTDESRRRKQSKSGIVHIK
Nucleotide sequence
Length: 2,339
>KH2012:KH.C14.349.v2.A.SL2-1
GAAAAGAATGCTTATCTAAAACAAACGACAGTTAATGTCAAAGCTACACTGGATAAAGTG
AACAAAAGGAATGAAGAAGTCACGCAAGATGTGCTTAAGTTTCATAATCAGTTACAGGAA
CTAATTACAAACAAATCGCAATTTTTTCTCCGAAAAATTGATGATATAACAACGCAACGA
CGAAATAAATTGACAACACAGCTTGCCATGACAGATAGATTAAATAGGGCAGTTGAACAC
TGTATCAGCTTTATTAATCAAGCAATGGATGATAGAAATGGAACTGCATTGTTACATTCC
AAGCAAGTCGTAAGTATAGCCCTACTAAGGTATGCCTGCCCACATTGCCTCCCCATGTTG
GGTGCCTATGCTATACAACCACTACCTATAACCAAGTATACCTACAGGCCAACCAGGGTA
AACATGGGAATGGGCCAACCACAAACTAGCAACATCAATATGAACTCAAATGGACGACAA
GATAATTATAACCAACGTAGGGGTGGGGTCAATCTGAATATTAGTCCAGTCAATCATTCT
ATACCTCATCAACAACCTCAGCAACAACAACCTCAACAACAACATCAACAACAACAACAT
CAACAACAGCAATATAACATGGGAAATATGAATCGTATGAAGCCTTTTGTATCTCGGGCT
TCTGTTGCAAATATGAAGCAAACTGCAGTTAATCATGGTCCTATAGAGAGATCCCATAGC
CATAATGCAATGCATGAACATGACCCTCCAACATTACATTCCCCTTTAAAACCGAACCTT
ACTGTCACCCCACCACCCCACCCCTCATTCATGGGGGAAGTCGCTTCCATGGTGAACAAT
GATGTCATCCCAGTGCTACAGATGCCAACATTAAACGAGAAGAAGCAAGACCCTCCACAC
CAGTCTCCAGAGAGCATTACACACGCAGTACAATCACCCAGCTTATCAAGTGCTGATAGC
GGCTTCGAAACTGGATTAAACCGGAATAATGACCAGAACAATTTGCCGAAACCTGACACA
GAAGATCATCTCTCACCCCCTCCTCTCCTCGACTTCTCCGAACTCATCAAGCAAGAAGCA
ATCGAAGAGGATGAAGACATGAAATACTTTGATGATAAACATGAAACCAGTGTTGAAGAA
ATGGTAATGTCTTTGGCTCAAGAGCAACAAAAAGAAATCCCAAAAACTTTGACAACCCCA
ACTACTAGTCCTAATACTAAAGCTAAAATGGGTGAAACTTCCCATTTTTCCGAATGGAAC
AATTTTACCGAAAACAACATGAGAAAATATGATCCAAATGAAGATTGGTGTGGTGTATGC
AACAATGGTGGCGACTTACTATGTTGCGACAGCTGCCCCAAAGTATTCCATGTTCATTGT
CATGTACCTGAGATACTGGCTGCTCCTCCTGGTATATGGCAATGTATGTTATGTCGGGAC
TTGGATGCAGCAGTGGAGATGGAGATGGGACCTGGTAAGAGGAAGCGGGTCATGGGTTTA
CAAGGAAAACCATTGAAGTTGTGCGAGCGTATCTTGCTTGAATTATTCTGCCATTCAAAG
AGTTCCCCGTTTCATTTTCCCGTCAAAAACTCAGTTCCGAATTATTACAAACTCATAAAG
GAGCCGATGGACTTCCTGAAAATCAAAAAAAAGCTTCAGCCTGGGAACTTTCAGCATTAT
GCTGGCTGTGAAAAGTTTTTATCAGATGTCTATCTTGTGTTTACTAACTGCTACCTTTTT
AACGGGGAAGACACCAGTCTTGGTCGAGCTGCCAAAGAAGTTCAAAAATATTTTTATGAA
CGTGTCCAATTATGGCTGCCATTTTTGAAGTTGAACTTAGACCGTTTGGAAGAAGACCAA
CGACAAATAATTACCGAGGCAGTTAATAAACAAGTAGTAGCAAACGAAAAACCCAAGCCC
ACATCAACGGACAAATCCAAGCCACACATTCCATACGAACACGACTCGCCTTGGAAACCA
GGACAAGACGAAACAGAAGAGGACGATGACGTCATTGAAAGTACGCCGTCGAGTGACGTC
AGCGAGGAACAAACAGACCTCACTGACGAATCTCGACGAAGAAAACAAAGCAAAAGTGGA
ATTGTGCACATTAAGTGATCTAAGGACATTTGCCGAAACATGTATCAAAAATCGACCTAT
ATTTTCACAACACTAAATTTTATTAAGACGCACTTTTCTATATTTTGGTTCTGTGAAGCC
GTATCTATATTTTGTCACAAACTACACATTTTACCATTTGCCCGTTGTTGTTATATTATT
TGCAGTTAAAGCGTTTATTTGTTTTCTACCAAATGTTTCTTAAATATATATCGCCATTG
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[427-480] 1.11E-13 |
| Gene3D |
Bromodomain-like_sf (IPR036427) - T[433-613] 2.4E-51 |
| ProSiteProfiles |
Znf_PHD-finger (IPR019787) - T[434-481] 9.294 |
| SMART |
Znf_PHD (IPR001965) - T[436-479] 9.3E-10 |
| ProSitePatterns |
Zinc_finger_PHD-type_CS (IPR019786) - T[437-478] . |
| SUPERFAMILY |
Bromodomain-like_sf (IPR036427) - T[491-607] 1.96E-28 |
| SMART |
Bromodomain (IPR001487) - T[501-607] 3.2E-23 |
| Pfam |
Bromodomain (IPR001487) - T[508-592] 5.7E-17 |
| ProSiteProfiles |
Bromodomain (IPR001487) - T[516-588] 16.032 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TIF1A_HUMAN | 44.865 % | 167 | 6.33E-43 |
| TRI33_HUMAN | 32.481 % | 179 | 9.63E-47 |
| TRI66_HUMAN | 45.402 % | 156 | 2.51E-39 |