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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C14.312.v2...'

Transcript Model

Transcript Id

KH2012:KH.C14.312.v2.A.ND3-1

Possible name(s)

LDB3; PDLIM1; PDLIM3

Location

KhC14 [388,507 / 395,346]

Sequences

Amino acid sequence

Length: 260

>KH.C14.312.v2.A.ND3-1
IAASQHKESQQVKMAPPRVQNSVTLFGSAPWGFRLSGGKEFNQPLVITRITPGSVAARSG
LTSGDVLVAVNGLFVTEMTQDQCEVKIKQAVGSIQLVVEKNAAAVSQNSSGEITMDADRS
IYVQGGPTHNRTGQSGTATRPMKVPISGHNSVPVFDPSMLKKSASTKQGTVVMKGPGKSK
VIHAQYNTPMGMYSNDNIIDTVQAQAQSMGVSLPGASGDSSPLNPNSAVFREVHRQSAAP
NKSNQSRSFKMLQSFVENEN

Nucleotide sequence

Length: 1,088

>KH2012:KH.C14.312.v2.A.ND3-1
TGATATGGAGCCGTGATGACAGCAAATAAAAGCATTAAATTGCAGCGTCACAACATAAAG
AATCACAGCAGGTTAAGATGGCTCCACCACGGGTTCAGAATTCTGTTACTTTGTTTGGAT
CTGCACCATGGGGTTTCAGATTATCTGGAGGAAAGGAATTCAACCAACCATTAGTTATTA
CACGGATTACACCTGGAAGTGTAGCAGCACGATCTGGCTTGACTTCTGGTGATGTATTGG
TCGCTGTAAACGGTCTGTTTGTTACTGAAATGACTCAGGATCAATGTGAGGTTAAAATAA
AGCAAGCAGTTGGATCAATTCAACTCGTTGTTGAAAAAAATGCTGCAGCTGTGTCTCAAA
ACTCATCTGGTGAGATAACCATGGATGCTGACAGAAGTATTTATGTACAAGGCGGGCCAA
CACATAATAGAACAGGACAAAGTGGAACTGCAACAAGACCTATGAAAGTACCTATAAGCG
GTCACAACTCTGTACCAGTGTTCGATCCATCGATGCTTAAAAAATCAGCATCAACAAAAC
AAGGAACTGTAGTCATGAAAGGACCAGGCAAATCTAAAGTGATCCATGCGCAATATAACA
CGCCTATGGGAATGTATTCGAATGATAATATCATTGATACTGTACAAGCACAAGCTCAAT
CTATGGGAGTGTCTTTGCCCGGGGCTAGCGGAGACTCTTCCCCTCTGAACCCAAACTCTG
CTGTTTTCCGCGAAGTACATCGACAGTCTGCAGCCCCAAACAAATCAAACCAGTCAAGGA
GTTTTAAGATGCTGCAGTCGTTCGTAGAAAATGAAAATTGATTGGAAAATATACTTAAGA
ACTGGAATTTTATTGCACCTTAAATACTATGTTTCGGTTAAAGTGTATGTTTGTATTTAA
AAACACAGACTGAAACCGGATAGAATATCTTCGAAACACAAAACTGCAAGTGTTTTTATA
AGTCTATTATTTATACTCTTGTGTTCATCTCGATCCAACTTGTAAAATTTTCCACCTGAA
GAGATGTGACATAATGCATAAACTATTGCCTATATAAAGTTATGTGTTACAATATACCTT
TGTGTATA

InterProScan

SUPERFAMILY
PDZ_sf (IPR036034) - T[23-101] 5.13E-19
ProSiteProfiles
PDZ (IPR001478) - T[27-102] 14.958
Pfam
PDZ (IPR001478) - T[28-99] 3.3E-14
SMART
PDZ (IPR001478) - T[29-102] 7.6E-17
Pfam
DUF4749 (IPR031847) - T[180-259] 2.1E-17
SMART
Zasp-like_motif (IPR006643) - T[180-205] 1.5E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LDB3_HUMAN 29.553 % 100 4.26E-24
PDLI3_HUMAN 33.846 % 133 6.06E-37
PDLI1_HUMAN 30.8 % 97.8 7.0E-24