- Transcript 'KH2012:KH.C1.389.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.389.v1.A.ND1-1
Possible name(s)
MUC4; SF3B1
Gene model
Location
KhC1 [4,535,462 / 4,549,058]
Amino acid sequence
Length: 1,268
>KH.C1.389.v1.A.ND1-1
EDDDEEEVVTTASLLGKRQTYTAPVALLNDIPQGQDIDPFADTRSKPIMHREDQYRQQRL
HRTISPERSDPFADGGKTPDPKLAQYRDVMKHQSLNKEEREIRTKITEKMNSGDMHVNGA
SKAAQAAAKKRRWDETPTVSGTTPKKRMTWDQAETPSHTPGLNRWEETPGRLKGGETPGA
AVTPGPGTRAWAETPGHATPGAMTPGRTPAVGQTPAGGTPSTRKNRWDETPKTERETPGR
SMGWAETPGRTDRAEDSVRDTPGASKRKSRWDLTPAAATPGNQTPSATPVFTPGGTPSSF
TPKSAMGTPSGTPSMYTPSGVTPVGVKAMGMATPSANQLMSMTPEQLQAWRWEREIDERN
RPLTDDELDTMFPEGYKVLPPPSGYMPIRTPGRKVTATPTPMGGSTGFHIQVEDKSMKGI
TDQPSGNLPFLKPDDIQYFDKLLVEVDEETLSPEEQKERKIMKLLLKIKNGTPPMRKSAL
RQVTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISVMRPDIDNMDEYVRNTTARAFAVVA
SALGIPSLLPFLKAVCRSKKSWQARHTGIKITQQIAILMGCAILPHLKNLVETIESGLED
EQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPL
MDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVESPYIKAEILPSFFK
HFWQHRMALDRRNYRQLVDTTVEIANKVGAHVIVQRIVDDLKDENEQYRKMVMETIDKIL
ANQGAAEIDHRLEEQLIDGILYAFQEQTTEDVVMLNGFGTVVNTLGKRVKAYLPQICGTV
LWRLNNKAAKVRQQAADLISRISVVMLACQEEKLMGHLGVVLYEYLGEEYPEVLGSILGA
LKSIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWM
RICFELLELLKAHKKSIRRAAVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI
AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAMSFLFEYIGEMSKDYIYAVVPLFEDA
LMERDLVHRQIASSAIGHMALGVYGFGCEDALNHLLNYVWPNIFETSPHVIQAVMSAIDG
IRLSLGPNRLLQYCLQGLFHPARKVRDVYWKIYNGIYIGSQDSLVPAYPRIYNDDKNQYI
RYELDYII
Nucleotide sequence
Length: 4,344
>KH2012:KH.C1.389.v1.A.ND1-1
CTGTAAAACTCAGAGGGAACACTGTTCCTTCAACTTTTATTTCGGGCTGTGCTACTGGTT
CCCCAAGCGATTTACATGTCCGAGATTCTGAATGCAGGAGTTTTGCAACTAATCAAACTT
TGCAGTTTTAGGTTTACCCAATAATATGCAGTTTTTATAACCATGAATATGATGGAACCT
CTCCTTATTTTTTGTCGCTGCACCACTGATCATCTGGTATTTAACTTTAAAAATATTGAT
TGTGTTTTAGGAAGATGATGATGAGGAAGAAGTTGTTACCACAGCAAGTTTACTCGGTAA
ACGACAAACATACACTGCTCCAGTAGCATTACTAAATGACATTCCACAGGGCCAAGACAT
CGATCCATTTGCTGACACCAGGTCTAAGCCAATCATGCACAGAGAGGATCAGTATCGACA
ACAGCGGTTGCATCGAACTATTTCTCCAGAACGAAGTGATCCATTTGCCGATGGAGGGAA
AACACCGGACCCAAAACTGGCTCAGTATCGAGATGTGATGAAACATCAGAGTTTAAATAA
AGAAGAAAGAGAGATTCGAACTAAAATAACTGAAAAGATGAATTCAGGTGACATGCATGT
CAATGGAGCTTCTAAAGCGGCTCAGGCTGCAGCTAAAAAGCGCAGATGGGATGAGACCCC
TACAGTCTCTGGCACAACACCGAAGAAAAGAATGACCTGGGACCAAGCAGAAACACCATC
ACATACTCCTGGGTTAAATAGATGGGAGGAAACACCTGGTCGGCTTAAAGGGGGTGAAAC
TCCAGGGGCTGCTGTAACTCCTGGTCCCGGTACTCGAGCATGGGCTGAAACCCCAGGTCA
CGCTACTCCTGGTGCAATGACCCCAGGTCGTACACCAGCTGTTGGGCAAACTCCTGCAGG
TGGTACTCCAAGCACCCGTAAAAACAGATGGGATGAAACACCAAAAACGGAGAGAGAAAC
ACCCGGTCGTTCAATGGGTTGGGCCGAGACACCAGGCAGAACAGATCGTGCAGAAGATAG
TGTACGTGATACTCCTGGTGCAAGTAAACGAAAATCTAGATGGGATTTAACTCCTGCAGC
GGCAACACCTGGTAATCAAACACCGTCAGCCACTCCAGTCTTCACTCCTGGTGGGACTCC
TTCTTCTTTCACTCCTAAGTCAGCCATGGGAACCCCGAGTGGCACACCTTCGATGTATAC
TCCGTCTGGAGTTACTCCTGTTGGAGTAAAAGCAATGGGTATGGCTACACCAAGTGCAAA
CCAACTCATGTCGATGACACCAGAGCAGCTACAAGCATGGAGGTGGGAGAGAGAAATCGA
TGAACGGAATCGTCCTCTCACTGATGATGAACTTGACACAATGTTTCCTGAGGGATATAA
AGTTCTACCCCCACCCAGTGGATATATGCCAATCCGAACACCTGGTAGAAAAGTAACAGC
AACTCCGACACCAATGGGTGGAAGTACAGGGTTTCATATTCAAGTAGAGGATAAATCAAT
GAAAGGCATCACAGATCAACCAAGCGGTAATTTACCATTTCTTAAACCGGATGATATTCA
ATATTTCGATAAGTTGCTTGTGGAAGTTGATGAAGAGACATTGTCTCCTGAAGAACAAAA
AGAAAGAAAAATAATGAAGTTGTTGTTGAAAATTAAGAATGGAACTCCACCGATGAGGAA
GAGTGCTTTAAGACAGGTAACAGACAAAGCTCGAGAGTTTGGTGCAGGACCCCTGTTCAA
CCAGATTCTACCTTTGCTAATGTCTCCAACATTAGAAGATCAGGAGAGGCACTTACTGGT
CAAGGTGATTGATCGAATATTGTATAAACTCGATGACTTGGTTCGACCTTATGTTCATAA
GATACTTGTAGTTATTGAACCTTTACTGATTGATGAAGATTATTATGCTCGTGTCGAAGG
TAGAGAAATCATTTCAAACCTTGCAAAGGCAGCCGGTCTTGCAACTATGATTTCTGTCAT
GAGACCTGATATTGACAATATGGATGAATATGTGAGAAATACAACAGCACGTGCATTTGC
TGTTGTAGCATCAGCATTGGGTATTCCTTCATTGTTGCCATTTCTTAAAGCTGTTTGTCG
AAGCAAGAAATCTTGGCAGGCTCGTCATACTGGTATCAAAATAACCCAGCAAATAGCCAT
CCTAATGGGTTGTGCCATTCTTCCTCATCTTAAAAATCTTGTTGAAACCATTGAATCTGG
GTTGGAAGATGAACAACAAAAGGTACGCACAATTACTGCCCTCGCTTTGGCTGCTCTTGC
CGAAGCAGCAACGCCGTATGGTATTGAATCGTTTGATAGTGTATTGAAACCTTTATGGAA
GGGTATACGAACACACAGAGGAAAGGGTCTTGCTGCTTTTTTGAAAGCGATTGGTTACCT
TATCCCACTCATGGATGCTGAGTATGCAAATTACTACACAAGAGAAGTGATGTTGATTCT
CATCCGGGAATTTCAATCTCCAGATGAAGAGATGAAAAAAATTGTGCTAAAGGTAGTAAA
GCAGTGTTGCGCAACTGATGGTGTTGAATCTCCCTACATTAAAGCAGAGATTCTTCCGTC
ATTTTTTAAGCATTTCTGGCAACATCGCATGGCATTAGATCGAAGAAATTACCGACAGCT
TGTCGACACAACAGTTGAAATTGCAAATAAGGTTGGAGCTCATGTTATCGTGCAACGAAT
TGTTGATGATTTGAAAGATGAAAATGAACAATACAGGAAGATGGTGATGGAAACCATTGA
TAAGATCTTGGCAAATCAAGGAGCTGCAGAAATTGATCATCGATTAGAAGAACAACTTAT
CGATGGAATACTTTATGCTTTCCAAGAGCAAACTACAGAAGATGTTGTTATGTTGAATGG
ATTTGGAACTGTGGTTAATACACTCGGAAAAAGAGTAAAGGCTTATCTGCCCCAGATCTG
TGGTACTGTTCTGTGGAGGTTGAACAACAAAGCTGCGAAAGTTCGTCAGCAAGCTGCTGA
TCTTATTTCCCGCATCTCTGTTGTGATGTTGGCTTGCCAGGAAGAGAAGTTGATGGGTCA
CTTGGGTGTCGTGCTGTATGAATATCTTGGTGAAGAATATCCAGAAGTATTAGGCTCGAT
TCTTGGGGCTCTTAAATCTATTGTAAATGTTATTGGCATGCACAAGATGACGCCTCCCAT
CAAAGATCTTTTACCACGGCTTACTCCAATTCTTAAGAACAGACATGAGAAAGTGCAAGA
AAATTGTATTGACTTGGTTGGTCGTATTGCTGACAGGGGAGCAGAGTATGTTAGTGCGCG
AGAGTGGATGAGAATTTGCTTTGAACTACTCGAGTTGCTAAAAGCCCACAAGAAATCAAT
TCGTCGTGCAGCGGTGAACACTTTTGGTTACATCGCGAAAGCAATCGGGCCACACGATGT
CCTCGCAACACTTCTAAACAACTTGAAAGTACAGGAACGACAGAATCGTGTTTGTACAAC
TGTTGCCATCGCTATTGTAGCAGAAACCTGCTCTCCATTCACAGTTTTACCTGCGCTAAT
GAATGAGTACAGGGTACCCGAGCTAAATGTCCAGAATGGGGTTCTTAAGGCGATGTCATT
CCTGTTTGAATACATTGGTGAAATGAGCAAAGATTACATCTATGCTGTTGTTCCTCTCTT
CGAAGACGCGTTGATGGAGCGTGATCTTGTTCATCGACAGATTGCATCGTCTGCCATCGG
ACACATGGCTCTTGGTGTTTATGGATTTGGTTGTGAAGATGCGCTGAACCATCTACTTAA
CTATGTGTGGCCAAACATATTTGAAACATCTCCTCATGTTATTCAAGCGGTGATGTCAGC
TATTGATGGAATTAGATTATCACTCGGCCCCAATCGTTTGCTTCAATATTGCTTGCAAGG
ATTGTTTCATCCAGCACGAAAGGTTCGAGACGTTTATTGGAAAATATACAACGGCATCTA
CATTGGATCACAAGATAGTCTTGTTCCAGCATATCCAAGAATTTACAACGATGACAAAAA
CCAATACATTCGTTATGAACTTGACTATATTATATAGTCAAGTTCAATTTGTAAAAAAAA
ATGTACAAACAAAATTCGTTTACTACCACACCAACCTATCAAGTTCAAAAGTATGGATTA
AAATTAGGAATCTCTTGCACAAAGTTGTCACCATAGAAGTTTGTGCCTGAAAATTTTGTA
AATGATGTTTCAGCGTATTTCTGATAGTGATAAAAAAAATAATTACCATATTTTAAACGT
AAAATAATGTGAAAATTGTTAATTTGCAGCGCTGTTATACCGGCAATCGTAAAAATGTGG
CGGAATAAACTGTATATACTCAAA
| Pfam |
SF3b_su1 (IPR015016) - T[263-415] 7.0E-43 |
| Gene3D |
ARM-like (IPR011989) - T[441-813] 1.3E-12 - T[873-1016] 2.8E-7 - T[1025-1234] 2.1E-9 |
| SUPERFAMILY |
ARM-type_fold (IPR016024) - T[464-550] 1.3E-97 - T[586-1065] 1.3E-97 - T[1103-1263] 1.3E-97 |
| ProSiteProfiles |
HEAT_type_2 (IPR021133) - T[650-688] 8.719 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B1_HUMAN | 80.569 % | 2053 | 0 |
