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TRANSCRIPT CARD

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  1. Region 'REG00001092' > 
  2. Transcript 'KH2012:KH.C12.208.v1...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S3...' > 
  4. Transcript 'KH2012:KH.C9.447.v1....' > 
  5. Transcript 'KH2012:KH.C13.78.v1....'

Transcript Model

Transcript Id

KH2012:KH.C13.78.v1.A.SL1-1

Possible name(s)

ADGRB3; HMCN1; THBS1

Gene model

KH2012:KH.C13.78

Location

KhC13 [1,177,998 / 1,190,555]

Sequences

Amino acid sequence

Length: 1,215

>KH.C13.78.v1.A.SL1-1
ICSEIERNMRWRFGFVFILDVSLIVCCGATRSTISLDSWSTWSSCSVTCGSGVATRRWKC
SGINCEQKVETKPCFPEFCPSYMTWPRLHYSGTIVYDANTVNNKRCNFDIENYPNIALKI
KEKTVYFVNKTIPSYKFQVNNWNPDGSGHVYFMNTTIKSICTGPLQCSTTDTIVGSVFKD
TSRGQLATIDVDFQVTSEIWGLAVEIPGVLKAKYLAGADQQKMNRIPHHHYDKKLRGYAY
NGMARLKSKLVDLQWSSSYYKQLFRNATELSVTIVIDLYNHFSFSGRVAGVIGLTSDDDP
KETSAGRMMKSQLQSLPAPFFVNYKHKIITLDLSSTLTGREDGTFITKGYDIGFKINCRF
PLVYATHICQNKITTKKGESVSLITTNGSFSSLYLDEAGRFYKVFAGIVDVDISHMSTRD
MNLLKYHEVVIVQKHNDQWKIVIGEFSKGVQVGIFSKVQLRLNLGQSKEYVSYISRFNKP
LPNTQVNIEVCPANAAVICGQPSCKLPLSTPRDALKIEALSPLTNSKGLITHKLTAVKSP
NGLRGCGLDGQLYMMKVQADVSIGGQMHSYLNGYFCGSKSTFYETVLWPLVRIYDETPVP
VCPTWMDVRGIFTQYYNLYPVMWKNGIINLRSYDDVRRRERMLKAAMFETDFSNSKYMPA
SRDLSLSKQKLIWNWMQCGMKYGNETRDALDPDICSPSKVNENLIHLKKLLQKAVFLELT
TIPPYFTAWLSLQTEYARNLKVANVLKSIYTEEMLHMSLAANFLNSIGGTVKLADMWNIP
IYPTQLAEGGYYDVAPQVLVALKPFSIGYVKDVFMKVEKPSPAKERNDLFEIVGLWKMLP
TASGDQFTNNMDQLIKEYETQYQDVSDNHETLDATEKLQLLQKWHAVKQSAARQLKPSPN
PINTVGSLYTQILSKTILLESCAKIDGLNNKGPGTIFVGDPIKQLNMSYWYNPVKKSKLE
ETAKFWSSEMSKEELVLNERQTSFKIKRVERDSFPPGSDLVSPLFPITDLKSAIQGVVEI
IYQGEGGSPCSPFKSAKPGGTLSLQTSHYVKFMEIVHGRTLVQMKRPSVDSGISCLNLTL
FDCPNKLKSDEAFCFAGDEIAFYEDGVWPIVSNPTPTMYKPGTDAHHFNHQFNIQYTRLL
FCLESAFGGNPSKMRSCMSYMYDLIITGKRLVRSPVGVTKDTFITQPHCSNCHATPTWDL
LRDIDQQLDLPLAPG

Nucleotide sequence

Length: 4,031

>KH2012:KH.C13.78.v1.A.SL1-1
AATCGGGGCTGCTAACGTATGCAGTATATTATACAGTAGATTTGTTCGGAAATCGAAAGG
AATATGAGATGGCGATTTGGTTTCGTTTTTATTCTGGATGTTAGTTTGATAGTTTGCTGT
GGTGCAACGCGTTCAACAATCTCATTGGACAGTTGGAGCACGTGGTCATCCTGCAGTGTG
ACGTGTGGTTCGGGGGTTGCCACTCGCCGTTGGAAATGTTCAGGAATAAACTGCGAGCAA
AAAGTCGAAACCAAACCATGTTTTCCAGAATTTTGTCCAAGTTATATGACTTGGCCCAGA
TTACACTACAGCGGGACGATTGTATACGATGCAAACACAGTCAATAACAAGAGATGTAAC
TTTGATATTGAAAATTATCCCAACATTGCTTTGAAAATAAAAGAAAAAACTGTTTACTTT
GTGAACAAGACGATCCCAAGTTACAAATTCCAAGTCAATAACTGGAATCCTGATGGTAGT
GGACACGTCTATTTCATGAATACTACAATCAAATCCATTTGTACAGGTCCCTTGCAATGC
TCAACCACTGATACTATTGTTGGATCTGTGTTTAAAGACACATCAAGAGGGCAATTGGCT
ACAATTGATGTAGATTTCCAGGTGACTTCAGAAATCTGGGGCCTTGCTGTGGAAATCCCT
GGTGTACTGAAAGCTAAGTATCTTGCTGGTGCAGACCAACAGAAGATGAACAGGATACCC
CATCATCATTATGATAAAAAACTAAGGGGTTATGCCTATAATGGTATGGCAAGATTGAAA
AGTAAACTAGTTGACCTTCAATGGTCAAGCTCTTACTACAAGCAGTTGTTCCGTAACGCA
ACCGAGCTTAGTGTGACGATCGTCATAGATTTATATAACCATTTCTCTTTCTCTGGAAGA
GTGGCTGGGGTTATTGGTCTAACATCTGATGATGATCCAAAGGAGACATCAGCAGGTCGA
ATGATGAAGTCCCAGTTACAATCGTTGCCCGCCCCTTTCTTTGTCAACTACAAACATAAG
ATAATCACATTAGATTTATCATCAACTTTAACTGGGAGGGAAGATGGGACATTTATTACA
AAAGGATACGATATTGGGTTTAAAATAAACTGCAGGTTTCCATTAGTGTATGCTACCCAT
ATATGCCAGAACAAGATCACAACTAAAAAAGGAGAATCCGTGTCCCTTATTACAACTAAT
GGTTCGTTCTCTTCACTTTACCTTGATGAAGCTGGCCGATTTTACAAAGTATTTGCTGGG
ATAGTAGATGTTGATATATCCCATATGAGCACAAGGGATATGAACCTGTTAAAGTATCAT
GAAGTGGTGATAGTGCAGAAACATAACGATCAATGGAAAATAGTGATTGGAGAATTCTCT
AAAGGGGTCCAGGTCGGAATATTCAGTAAAGTACAATTAAGATTGAACCTGGGCCAGTCA
AAGGAATACGTTTCGTATATTTCAAGGTTTAATAAACCTCTTCCAAACACACAAGTTAAC
ATTGAAGTTTGTCCAGCTAATGCAGCGGTTATATGCGGGCAGCCTTCATGTAAATTGCCT
TTATCTACACCCAGAGATGCTTTAAAAATTGAAGCTTTGTCCCCACTCACAAATAGCAAA
GGATTGATAACCCACAAACTAACTGCAGTTAAAAGTCCTAATGGTTTGCGTGGGTGTGGA
CTAGATGGTCAACTGTATATGATGAAAGTACAAGCAGATGTTAGCATTGGAGGGCAGATG
CATTCATATTTGAACGGGTATTTTTGTGGATCCAAATCAACTTTCTATGAAACTGTTCTG
TGGCCATTAGTACGAATATATGATGAGACACCTGTCCCAGTTTGCCCCACTTGGATGGAT
GTTAGAGGTATCTTCACACAGTACTACAACCTATACCCTGTCATGTGGAAGAATGGAATA
ATTAACCTTAGATCTTACGATGATGTGCGAAGGAGAGAAAGAATGTTAAAAGCCGCCATG
TTTGAGACTGACTTCTCAAACTCAAAATACATGCCAGCTTCACGTGATTTATCGCTGAGT
AAGCAGAAATTAATCTGGAACTGGATGCAATGTGGAATGAAGTATGGGAATGAAACAAGA
GATGCATTGGATCCTGATATTTGTAGTCCAAGCAAAGTAAATGAAAATCTCATTCATTTA
AAAAAACTTCTACAAAAAGCTGTATTCCTTGAGCTAACCACAATCCCCCCATATTTCACT
GCATGGTTAAGTTTACAAACTGAATATGCAAGGAATCTTAAAGTAGCTAATGTCCTCAAA
TCAATCTACACTGAAGAGATGCTTCATATGTCACTTGCCGCAAACTTTCTTAACTCAATA
GGTGGGACAGTGAAGTTAGCTGACATGTGGAATATACCAATCTACCCCACACAGTTAGCA
GAGGGTGGTTACTATGATGTAGCACCTCAAGTATTGGTTGCATTGAAGCCATTCTCTATT
GGATATGTTAAAGATGTCTTCATGAAAGTTGAAAAACCATCGCCGGCGAAAGAAAGAAAT
GATTTATTTGAAATAGTTGGTTTATGGAAGATGCTCCCTACTGCCTCTGGTGACCAATTT
ACAAACAACATGGACCAGCTGATCAAAGAATATGAAACACAATATCAAGATGTCAGTGAC
AACCACGAAACTTTAGATGCCACGGAAAAGTTACAACTTCTACAGAAGTGGCACGCTGTC
AAGCAATCAGCTGCCAGACAGTTAAAACCTTCACCAAATCCTATAAATACAGTAGGGTCT
TTGTATACACAAATATTATCAAAAACAATACTTTTGGAGTCATGCGCTAAAATTGATGGG
TTAAACAATAAAGGGCCTGGAACTATATTTGTAGGCGATCCAATTAAACAGTTAAATATG
TCATATTGGTATAATCCCGTGAAGAAAAGTAAATTAGAAGAAACAGCAAAGTTTTGGAGT
TCTGAGATGTCAAAAGAAGAACTCGTCCTCAACGAAAGACAAACAAGTTTTAAGATCAAG
AGAGTTGAGCGAGATTCTTTTCCTCCAGGATCAGATCTTGTCTCTCCTCTTTTCCCCATC
ACTGATCTTAAGTCTGCCATTCAAGGAGTTGTTGAGATCATTTATCAGGGTGAAGGGGGA
AGTCCATGTTCACCCTTTAAGTCAGCCAAGCCTGGTGGGACTCTGTCACTCCAGACTTCT
CATTATGTGAAGTTCATGGAAATTGTACATGGTCGGACGTTGGTTCAAATGAAAAGACCA
TCGGTTGACAGTGGGATATCATGTTTGAACCTCACACTTTTCGACTGTCCAAACAAACTC
AAAAGTGATGAAGCTTTCTGCTTTGCAGGGGATGAAATAGCTTTTTATGAAGATGGTGTA
TGGCCAATAGTAAGCAACCCCACACCAACCATGTACAAACCAGGGACAGATGCTCACCAT
TTTAACCATCAGTTTAATATTCAATACACAAGATTACTTTTCTGTTTAGAATCTGCATTT
GGTGGAAACCCGTCTAAAATGCGGTCATGCATGAGCTACATGTACGACCTGATAATCACG
GGCAAACGGTTGGTCAGATCACCAGTGGGTGTCACTAAAGATACATTTATTACGCAACCA
CATTGTTCAAACTGCCACGCTACGCCAACTTGGGATTTGTTAAGAGATATTGACCAGCAG
TTAGATTTGCCATTAGCTCCTGGATAAAACACATTATGCCATAATACCTGTGTGTATGAT
AAATTAATTGCTATAATACTTTCATTTATGATGTAATAATGCCATAATACTTGCGTTTAT
GATGGAACAATTGTCATATTACTTGCGTTTATGATGGAACAATTGTCATATTACCTGCGT
TTATGATGGAACAATTGTCATATTACTTGCGTTTATGATGGAACAATTGTCATATTACTT
GCGTTTATGATGGAACAATTGTCATATTACCTGCGTTTATGTTGGAACAATTGTCATAAT
ACTTGTGTTTATGATGAAATAGTAGCTACAGATCTGCATTTGGAGGATATTATTTATTTT
CTCTGTGATGA

InterProScan

Gene3D
TSP1_rpt_sf (IPR036383) - T[20-84] 1.2E-8
ProSiteProfiles
TSP1_rpt (IPR000884) - T[33-80] 9.617
SMART
TSP1_rpt (IPR000884) - T[36-80] 5.2E-8
SUPERFAMILY
TSP1_rpt_sf (IPR036383) - T[37-79] 5.75E-7
Pfam
TSP1_rpt (IPR000884) - T[39-74] 6.2E-6
Gene3D
Ferritin-like (IPR012347) - T[698-837] 1.6E-27
SUPERFAMILY
Ferritin-like_SF (IPR009078) - T[708-784] 8.12E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value