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TRANSCRIPT CARD

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  1. > 
  2. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  3. Region 'REG00000814' > 
  4. Transcript 'KH2012:KH.C1.352.v1....'

Transcript Model

Transcript Id

KH2012:KH.C1.352.v1.A.SL1-1

Possible name(s)

NAA38; SNRPB; SNRPN

Gene model

KH2012:KH.C1.352

Location

KhC1 [910,294 / 911,892]

Sequences

Amino acid sequence

Length: 92

>KH.C1.352.v1.A.SL1-1
MSANTSECETTETMKPRDIISQWLGKSMKIGMSDGRTLVGQFLCTDQAKNVILGSAQEYL
NYSEDNCKEDPRMLGLAMVPGKHIVSMQVDMN

Nucleotide sequence

Length: 1,598

>KH2012:KH.C1.352.v1.A.SL1-1
AGTGGTTGTTTAATGCTGGTAGTGTGTACGAAGCTAGATGAGTGCCAATACAAGCGAATG
TGAAACTACAGAAACTATGAAACCACGTGATATAATCTCGCAATGGCTTGGTAAAAGCAT
GAAGATTGGAATGTCAGATGGAAGGACATTAGTTGGACAATTTCTTTGTACTGATCAAGC
AAAGAACGTAATTCTTGGTTCAGCGCAAGAATATTTAAACTATTCCGAGGACAATTGTAA
AGAAGATCCACGTATGTTGGGACTAGCAATGGTGCCAGGGAAACATATTGTTTCAATGCA
AGTTGACATGAATTGATTATATCAATATAGGTTTACTGGCTTCTCGTGTTTGTTTCATAT
TTAAGAAATCATTTTAACTTTTATAAAATAATATTCTTCTCATCTTCTGCATTCATAAAA
TACCTCTAAATGCTAAACATTGACACCTGATTGACAGATTGAAAATACCCAAAGGTTCTG
TAAACAAGCGCAGCAGAGATGAAGTGTTTGCAGTGGAATTTCTTTAGGCAGTGGTACCAA
ACCTTATTTCCTTTCCATTCAAAATACGAAATCCAATGTTTCAGTAGCAACCTTAAATAT
TATCCTTCCCCACACAAATATTCGAATTGCTTCACCTTGAAACCTGATTGATAGTTTAAA
ATCTTACCTCGAGCTTATGTGCTGAATTGCAGTTAAGATCGGGTTTTTGAGAAAAGTTTG
CAGTGACATAATATTACTGACAATGCCACATATTATTTTACAGTCTATACCTTTTTTCTT
TTCATTCAGAATACGAAATTCAATGCTTAAGTAATATTAGCAAGTTTAACACAATAATGC
TATATTATCTTGGCATAGATTCACTATTTACATGTACCAAACATGCAGAACGCTCTACTA
CTGCACAATTACAAATAATTTCAGGTACTCAAAAGCGAAAAAGCATATGGTTACAATCTG
CTCCACACACAAACACATATCTACACAAGTAACATATTCGGATTTAAATAAAGCAGTAAC
TTATCAGCATAGAGGTACGCTTGCCTGCTTCGTACAGTAATTGTACAATGAGGACCAATT
CAATTGATATGCTTTAACACGTTGGGCATAAATAAAATACAAAACAGCACACCATGAGTT
CAGTGTCTGGTTATCACAACAAACAACAGTATACATTGAACGTTAAAAATTTCCTTTTGA
TGATGTAACTAATTTATATTAAAACTACAGCATATATCGATACAATGTGTGTCTCCTAAG
AGCAGGGGTGTAAAAAAACTACAACTGTGTTTTATGGTTCAAGAGAAAACATTTGAAAAG
CGTGTTAGCTCTTTATTTTCTTCTGGTTATAAGTTGCCACTTCATAAGAACTGACTTGGG
TTTGCAGCCGGGTCCTTTTGATTTCTAAAACGAACCGCTAACCATACTCCAAGCATCTAA
AAAAGTTGTATATATTTAGATTAATTATAATATGTGATAACCAAGGTCCCAAACCATTTA
TCACTACTTAATTTTGTTATTTTTCATTAATGTGTTATTCCTATCACTTTTACCATGATT
TAAAATAATGCTATTAATTTTTATCACGAAAAGAGTAT

InterProScan

PANTHER
LSMD1 (IPR034110) - T[11-90] 2.4E-35
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[14-89] 2.77E-16
CDD
LSMD1 (IPR034110) - T[17-90] 1.52999E-34
SMART
LSM_dom_euk/arc (IPR001163) - T[18-89] 4.4E-7
Pfam
LSM_dom_euk/arc (IPR001163) - T[21-88] 4.7E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LSMD1_HUMAN 55.422 % 92.4 7.13E-26