- Transcript 'KH2012:KH.C13.116.v1...'
Transcript Model
Transcript Id
KH2012:KH.C13.116.v1.A.nonSL6-1
Possible name(s)
COL11A2
Gene model
Location
KhC13 [1,601,913 / 1,630,881]
Amino acid sequence
Length: 1,336
>KH.C13.116.v1.A.nonSL6-1
IRSIVSETMGTSTSSIVTPQWGKQSALAAWLLCCISLAIIPNVQTARIDLLDRFKISTSL
GVSPVPGSCANAKKRAAPRTAFRLSRNTQAIALPSDYVFSEFVRDGFPQEFSITAIIKPK
VGVRNPFLLQMMHADRWRQLGFTVGEEPEFHYRTDTDVPPDYPTFSSVNLADGRWHKVAW
SVYNENVQLWVDCVMVTEKIVRSDANTQLNLGGVVLLGKEPGTSGNGFVGDIENLYFDSD
PSVAGQMCFPASNLSPNCGSTAAAIREEPETAVFSAAGTPNPEESEGLIIPDSSLPGERD
GGRGDNGDGGSRGQKGEKGEQAVIEPGIFIPGPPGPPGEPGLDGPPGFQGPPGGPGEMGD
RGLDGPPGFQGPPGGPGEMGDRGPAGRDGLPGAKGLPGPPGRHIMIPFRIAQPHGQKGPG
SNAPAELQAQLALTQARLALQGPPGPQGLSGMTGAAGDMGPAGIKGESGEPGPMGQRGSR
GPPGLDGVSGKTGRPGEDGLRGEPGPVGIKGDRGYDGLPGLPGPKGHRGETGGVGPIGPP
GVDGEQGEHGEPGPRGLPGEAGPRGELGHKGPPGVSGPPGPRGVHGQQGSKGNLGPQGEP
GPPGQQGAPGPQGISGPQGLMGPPGVKGPPGKSGLPGIPGADGVPGHPGNEGPSGSKGSQ
GQFGPQGPQGYPGTRGVKGEGGVRGIKGNKGEKGLDGLAGFKGDMGPKGDGGISGAPGPR
GEDGPDGPKGREGPRGEVGPVGLPGEKGKIGLPGILGYPGRSGIKGSLGKPGKTGHTGLK
GDRGLEGKRGQQGQRGPKGPRGKRGPRGSTGKSGPKGDRGQDGPQGPIGERGPPGPRGAS
GYTGSKGPPGPPGKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQGPTGENGPSGERGHP
GPPGPIGEPGLSGSAGKEGSKGDRGPNGPPGKMGATGSPGFPGSRGPQGPVGAPGLKGNE
GPPGPTGPAGVSGQRGPPGPSGQIGPLGRPGSSGPAGPPGENGSPGGPGGPGPAGRDGLQ
GPVGLPGPPGSIGPRGEDGDKGEAGPPGSTGLKGGKGEHGPPGPPGEQGNSGEPGPAGND
GEPGARGQQGLYGEKGDEGARGFPGPPGPRGLQGIPGTSGNKGDSGDAGPLGPPGPPGQR
GPPGVQGADGPLGPPGTYGQPGNVGDKGEPGNVGAPGIPGDSGPMGPNGEAGQKGETGPS
GPQGENGPKGPRGDDGPKGEPGPIGHPGDPGVAGIPGTMGDEGPPGDVGDTGAPGEPGPP
GPIGEVGPSGGPGRRGPAGNPGTEGRSGEKGAKGEAGGIGPVGEPGAHGPQGKHGKQGCT
GLNAIAWPCRCTWVAW
Nucleotide sequence
Length: 5,440
>KH2012:KH.C13.116.v1.A.nonSL6-1
ATTCGTTCAATTGTGAGCGAAACAATGGGCACCAGCACATCGTCCATTGTTACGCCACAA
TGGGGCAAACAATCAGCATTAGCGGCGTGGCTGCTGTGCTGCATTAGCTTGGCTATAATT
CCAAACGTACAAACGGCTCGAATTGACTTGTTGGACAGATTTAAGATATCGACCAGTCTT
GGGGTGTCTCCTGTTCCGGGGAGTTGCGCCAATGCAAAGAAAAGGGCTGCACCAAGAACT
GCCTTCAGGCTTTCTAGAAACACCCAGGCCATTGCTCTACCATCGGACTATGTCTTCAGC
GAATTCGTTCGCGATGGCTTCCCTCAAGAGTTCTCGATCACGGCAATTATCAAACCAAAA
GTTGGGGTCAGGAATCCATTCCTGCTCCAAATGATGCACGCTGATCGGTGGAGACAACTT
GGTTTTACTGTGGGAGAAGAACCAGAGTTCCACTACAGAACAGACACAGACGTTCCACCT
GACTATCCAACCTTCTCGAGTGTCAATCTTGCTGATGGAAGATGGCACAAAGTTGCGTGG
TCAGTTTACAACGAGAACGTACAGTTGTGGGTGGATTGCGTCATGGTGACGGAGAAGATC
GTTCGATCTGACGCGAACACACAACTCAACCTTGGAGGTGTGGTTTTGCTAGGAAAAGAA
CCCGGGACATCTGGAAATGGATTTGTGGGAGACATAGAAAACCTATACTTCGACTCAGAC
CCGAGTGTAGCTGGCCAGATGTGTTTCCCAGCATCCAACCTATCTCCAAACTGTGGATCT
ACAGCAGCAGCCATCAGGGAAGAACCAGAAACTGCTGTTTTCTCTGCAGCTGGCACCCCA
AACCCAGAGGAATCTGAAGGTTTAATAATTCCTGATTCATCTTTACCTGGTGAAAGGGAT
GGGGGAAGGGGAGATAATGGAGATGGTGGAAGCAGGGGACAAAAAGGAGAGAAGGGAGAA
CAAGCTGTGATTGAACCTGGGATTTTCATTCCTGGACCCCCCGGACCGCCTGGAGAACCT
GGTCTCGACGGACCTCCTGGATTCCAAGGACCACCGGGTGGCCCCGGAGAGATGGGAGAT
CGGGGTCTCGACGGACCTCCTGGATTCCAAGGACCACCGGGTGGCCCCGGAGAGATGGGA
GATCGGGGCCCTGCTGGTAGAGATGGACTTCCTGGCGCCAAGGGGCTTCCTGGTCCGCCT
GGTCGACACATCATGATACCATTCAGAATAGCTCAACCTCATGGACAGAAGGGACCAGGT
TCGAACGCACCAGCTGAACTCCAGGCACAACTTGCTTTAACACAAGCTAGGCTTGCTCTA
CAAGGACCACCTGGACCACAGGGATTGTCAGGAATGACTGGAGCTGCTGGTGACATGGGA
CCTGCAGGCATTAAAGGCGAAAGTGGTGAACCAGGACCTATGGGACAAAGGGGGTCACGT
GGTCCCCCTGGTTTGGATGGTGTGTCCGGCAAAACTGGAAGACCAGGAGAGGATGGTTTA
CGAGGTGAACCTGGACCTGTTGGAATCAAGGGTGACAGAGGATATGATGGTCTTCCTGGC
TTACCAGGACCAAAGGGGCACAGGGGTGAAACTGGCGGAGTTGGACCTATTGGACCACCA
GGTGTCGATGGAGAGCAGGGAGAACATGGTGAACCAGGACCTCGTGGATTGCCTGGCGAG
GCGGGACCACGTGGAGAGTTGGGACACAAGGGACCACCTGGTGTTTCTGGGCCTCCTGGA
CCAAGAGGTGTTCATGGGCAACAAGGATCAAAAGGAAACTTGGGCCCACAAGGAGAGCCT
GGTCCACCTGGACAACAAGGAGCACCCGGGCCACAGGGTATATCTGGTCCCCAAGGGTTG
ATGGGTCCACCTGGAGTCAAAGGACCCCCCGGGAAGTCTGGGTTACCCGGTATTCCTGGG
GCTGATGGGGTTCCTGGTCACCCTGGTAACGAGGGCCCTAGTGGGTCAAAGGGGTCACAG
GGTCAATTTGGACCACAAGGGCCACAGGGTTATCCTGGTACCAGAGGTGTCAAAGGAGAA
GGAGGAGTGAGAGGAATAAAAGGAAACAAAGGAGAAAAAGGTCTCGATGGTTTAGCCGGT
TTCAAAGGTGACATGGGACCTAAAGGAGATGGCGGGATTTCTGGCGCTCCAGGTCCACGC
GGAGAAGATGGGCCAGATGGCCCTAAGGGAAGAGAAGGTCCTCGTGGAGAAGTTGGCCCT
GTTGGTTTGCCCGGTGAAAAGGGAAAGATTGGTCTCCCTGGTATTCTGGGTTATCCTGGA
AGATCTGGTATCAAGGGGTCACTGGGCAAGCCTGGAAAAACTGGACATACTGGACTCAAG
GGTGACCGGGGCTTGGAAGGCAAGAGAGGTCAACAAGGTCAAAGGGGGCCAAAGGGTCCA
CGAGGCAAACGAGGTCCGAGAGGATCTACTGGGAAATCTGGACCAAAGGGTGACAGAGGA
CAAGATGGACCGCAAGGACCAATCGGAGAAAGAGGCCCACCAGGACCCAGAGGAGCAAGT
GGTTACACTGGCAGCAAGGGACCCCCTGGCCCACCAGGAAAAGATGGTTTACCTGGACAC
CCTGGAAGTCGGGGTGAAACAGGTTTCCAAGGGAAGACTGGGCCCCCTGGACCTGCTGGT
GTTGTAGGACCTCAAGGTCCAACCGGTGAAAATGGACCATCAGGGGAGCGAGGACACCCG
GGACCTCCTGGACCAATTGGAGAACCTGGTTTGTCTGGATCTGCTGGAAAAGAGGGATCT
AAGGGAGACAGAGGACCAAATGGACCCCCAGGAAAGATGGGTGCAACAGGTTCACCGGGT
TTCCCAGGTTCAAGGGGACCACAAGGCCCTGTGGGTGCTCCAGGATTGAAGGGTAATGAA
GGACCTCCTGGCCCCACTGGACCAGCTGGCGTCAGTGGTCAACGCGGCCCTCCTGGTCCC
TCTGGCCAAATTGGACCTCTGGGTCGCCCAGGGTCAAGTGGGCCTGCTGGACCACCTGGT
GAGAACGGAAGCCCCGGTGGACCTGGAGGCCCAGGACCTGCTGGTAGAGATGGTCTACAA
GGGCCTGTTGGTCTTCCTGGTCCTCCTGGTTCCATTGGCCCAAGAGGAGAAGATGGGGAC
AAGGGTGAAGCTGGTCCACCAGGCTCCACAGGTTTGAAAGGCGGGAAAGGCGAACATGGG
CCACCTGGACCTCCCGGTGAACAAGGAAACAGTGGAGAACCTGGACCTGCTGGTAACGAT
GGTGAACCCGGGGCTCGGGGTCAACAAGGTTTATATGGAGAGAAGGGTGATGAAGGGGCT
AGGGGATTCCCCGGACCCCCAGGACCCCGTGGCTTACAGGGTATTCCCGGAACTTCTGGC
AACAAAGGTGACTCAGGAGATGCTGGACCTTTGGGACCACCTGGCCCTCCCGGACAACGA
GGCCCCCCTGGTGTTCAAGGTGCCGATGGACCTCTTGGCCCCCCTGGTACTTATGGACAA
CCTGGCAACGTTGGAGACAAGGGTGAACCTGGTAATGTAGGAGCACCTGGTATTCCTGGA
GATTCGGGCCCAATGGGACCAAACGGAGAAGCGGGACAAAAGGGTGAAACTGGGCCATCG
GGACCACAAGGTGAAAATGGACCAAAAGGACCTCGCGGAGATGATGGTCCTAAAGGAGAA
CCTGGACCCATCGGCCATCCTGGAGACCCTGGTGTGGCTGGTATTCCTGGTACAATGGGA
GACGAAGGACCACCGGGTGACGTTGGTGACACGGGAGCACCTGGAGAGCCGGGACCTCCT
GGACCCATCGGTGAGGTTGGACCTTCTGGTGGCCCCGGAAGACGGGGACCTGCCGGTAAC
CCTGGAACTGAAGGACGATCTGGAGAGAAAGGAGCTAAGGGTGAAGCTGGTGGTATTGGA
CCTGTAGGCGAACCTGGTGCCCATGGACCTCAAGGTAAACATGGAAAACAAGGATGTACC
GGTTTGAATGCTATTGCCTGGCCCTGCAGGTGCACCTGGGTTGCCTGGTAACGCTGGAGC
TGATGGCCCTGTTGGCCCAATGGGACCTACTGGTTTGAAAGGAATAAAGGGAGAAGTTGG
CCCCGGTGGTGAAAAGGGTCACCCTGGTTTGATCGGTTTGGTCGGACCCCCAGGTGAAGA
GGGTGAGAAGGGTGAACGTGGACCCCATGGTAGAGATGGACCCCCAGGGGTTAAGGGTGA
CGATGGAAGACCTGGCCCCGCTGGCCCAATAGGGCCAATGGGACCACCTGGGTTACCGGG
TGGAGTTGGAATGAAAGGAAATAAGGGAAGCTTGGGACCCACCGGCCCCAAGGGAGATGA
AGGTATCCAAGGGCCTCCTGGCCCTCCTGGTCCACCCGGCGAAGTCTTCAACGCAGGAGC
ACTTAGAGCGCCGAGCTCAATCAAGGCTCGTGCAAGAAGGTCAGCTGAGGAGGAGACAGA
AGGTGCCAGAGTGAAACGCCAAGCTGTGTTTGAGGAGAACATGGTTGATGATTATCCACA
AGGCTTGGAGGAAATCTTCGGGATGATGGAATCAATTAAGATGGATCTGCAAATGTTGAA
AGAACCAATGGGACGAACCAGAGAAAATCCTGGCAGGACTTGTAAGGATATCTGGTACTG
TCATCCAGACTTTGCTTCAGGATTATACTGGATCGATCCGAACGGTGGGTGCTCGGCAGA
CGCCATTGAGGTCTGGTGTGATTTTGAGGCAGAAGGAGACACTTGTCTCAATCCTCTCAC
GGTTACCATTCCAGCTCGAAGGTGGCCTAAAGCTTCACCTGGAGATTGGTACAGCTCTTA
CAGGCTTGGGGAGAAGTTTGATTACAACACCACCATCCCACAATACAACTTCCTGAGGTT
GCTGTCGAGTCACGCTCGCCAGAGATTCACATACAAGTGTGTCAACTCTATTGGATGGGA
AGACCAACAGAACGATAACTTCAACAAAGCAATTCAACTTATGGGTTCAAATGAAGTTGT
TTTCACTCATGGAAGTGAAGAAGTAACAGTGTTGGAGGACTCTTGCAAGAGTGGACAGGG
AACTGGACAAGTTGTGATTGAGGTTCGAACCAAAGAATTAGAGATGTTGCCGTTGGTCGA
TTACAAGGCCTTCGATTTTGGAACACGACCACAACGGCACGGCTATCATCTCGACCGTGC
TTGTTTCAGTGGCTGAATGTAATCATGTGTGTCTTCACGGGGCATTTATGATGGGTGGCA
CGCGCCACGGGATGTGTACGCCTCCTCTTAATGAAGTCGTGTACACTATGGAGAAGAAAT
GGGTACGCAAGTGCTGGTGCATACCCATTTCTTCATCATCACATGACCTCTGTGGACCAA
TCAAATTCTTTGTGGGATTCTAGACTGTGTGATGTCATCAGTATTACGTAATACCTCACT
GTTGCTGCTGAGTTGCGTTTTTGGCGGAAATACAAACTTT
| SMART |
Laminin_G (IPR001791) - T[47-241] 1.1E-15 - T[109-240] 3.3E-6 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[48-248] 1.19E-29 |
| Pfam |
Laminin_G (IPR001791) - T[164-239] 3.3E-8 |
| Pfam |
Collagen (IPR008160) - T[344-402] 4.3E-7 - T[442-497] 2.1E-8 - T[699-754] 7.3E-7 - T[1123-1180] 2.3E-8 - T[1264-1321] 1.6E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 64.961 % | 576 | 4.47E-179 |
| COBA1_HUMAN | 54.943 % | 470 | 1.95E-140 |
| CO5A3_HUMAN | 59.144 % | 496 | 4.57E-150 |