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  1. Transcript 'KH2012:KH.C12.8.v2.C...'

Transcript Model

Transcript Id

KH2012:KH.C12.8.v2.C.ND2-1

Possible name(s)

DEAF1; SAMD11; SAMD7

Location

KhC12 [3,425,836 / 3,430,295]

Sequences

Amino acid sequence

Length: 610

>KH.C12.8.v2.C.ND2-1
ITCKIRLKKYLGYKVKSESPPMKRRHSDDDDAFPVPNGRDNEHNVRDKDRESSSAEPLCL
ASHGSSKKEKTHSNKTSKKENDVIFDPRRIGSNDHNKSPNGRNHYPDFNDCASNGYRPNL
GFAEYALFDAMKRAVASVSGGSYPDSVSTPPPNRRDVSSPNRGYINLDSTSPRGLTSQNY
PQSRNQQPMMELVSPHRKNGTSRESYGFGNSVDSRLRNGGLFDAPLPSNKAPVTVLHHRP
NSYSPHRSNPSHTHHYYGMPPPSSSRHSPDGRGARTPRREVPFSAPARFDRKTNTPIKKT
PDHQRSRLHGRSDARGTKMLDLQNHAIPMMSLTYSNKKASRGRQSDSSPPQFSTGSATSN
AGKCVYSDDEVARTSDLNRRLSSSAPPISLPSSKSRKFYTDENNNRSSDDQPSSRQYVFG
GGKRAKSSSPGSPSDAPFFCDDRRSQDPVDPCGFSCGAACQNSFQELRLRELSCAIDQMA
ELSVDGVCEMLEEIGCGEYQEVFRKNCISGDALPLLAEHHLVEMMGLKLGHALKIIAQIH
RRLGNHCFLMTNQLPAFRHASPIDYLCLRKQAATPNGQSDNITTPARVAKEAEIKKVAEN
EKVPENTTAE

Nucleotide sequence

Length: 2,645

>KH2012:KH.C12.8.v2.C.ND2-1
GGGCTGGCAGAGTTTCCGGTCTACAGACTGTAGTTTTTATAATGACGCACTGATCACTGA
CCAACTGCCTCTGTTTCCTGCCTTGATGACGAAGTTGTATATTATGAACTACCCGCGGAA
TATGTGATTTGAACAAACATCCTGCATCATATTATGTTTGCTGTCAGAATAACTTGAATT
ACTTGCAAAATACGGCTAAAGAAATATTTAGGTTATAAAGTTAAGAGTGAAAGCCCTCCA
ATGAAAAGAAGACACTCGGACGACGACGATGCTTTTCCAGTGCCCAACGGTAGGGATAAT
GAGCATAATGTAAGAGACAAAGACAGGGAAAGTTCTTCTGCTGAACCACTTTGCCTCGCC
TCGCACGGATCTTCTAAGAAGGAAAAAACGCACTCCAATAAAACAAGCAAAAAAGAAAAC
GATGTAATATTCGACCCTCGTCGCATCGGATCTAACGACCACAATAAGTCGCCTAACGGA
AGAAATCATTATCCAGACTTCAACGATTGTGCATCGAACGGTTACCGACCAAACTTGGGC
TTTGCTGAATACGCTTTGTTTGACGCTATGAAACGCGCAGTTGCGAGTGTCTCTGGTGGA
TCCTACCCTGACAGTGTTAGTACCCCACCTCCTAACAGAAGAGACGTATCTTCACCTAAC
AGAGGCTACATCAATCTTGACTCTACGTCACCACGGGGTCTTACATCTCAAAATTACCCG
CAATCCCGAAACCAACAGCCTATGATGGAACTAGTGTCTCCCCACCGTAAGAATGGGACG
TCTCGAGAATCCTATGGTTTCGGCAACTCGGTCGACTCTCGGTTACGAAACGGAGGCCTC
TTCGACGCACCGTTGCCAAGTAACAAAGCGCCTGTTACGGTTCTACACCATCGGCCCAAC
TCCTATAGCCCCCACAGAAGTAACCCTTCCCATACCCACCATTACTATGGCATGCCACCA
CCTTCAAGCAGTCGCCACTCACCCGATGGTAGGGGGGCTCGAACCCCGCGTAGGGAAGTT
CCCTTTTCCGCTCCTGCCCGTTTTGATCGGAAGACGAACACTCCAATAAAAAAGACCCCG
GATCATCAGAGGTCTCGTCTTCACGGAAGATCGGATGCGAGAGGAACAAAGATGTTAGAT
CTTCAGAATCATGCTATACCAATGATGTCGCTGACATACAGCAACAAAAAGGCTTCTCGT
GGACGTCAATCTGATTCTAGTCCGCCTCAATTCTCTACTGGATCTGCAACTTCAAATGCA
GGCAAATGCGTTTACAGCGACGATGAAGTAGCTCGTACAAGCGACCTCAACAGACGCCTA
AGTTCCAGCGCACCCCCTATATCCCTGCCAAGCTCAAAATCTAGGAAATTTTACACGGAC
GAAAATAATAATCGTTCATCTGATGATCAGCCGTCTTCTCGACAATATGTTTTCGGAGGT
GGTAAAAGAGCAAAGTCCTCTTCTCCAGGATCTCCGTCCGATGCTCCCTTTTTCTGCGAT
GATCGCCGCAGCCAAGATCCAGTTGATCCGTGTGGATTTTCTTGCGGAGCTGCATGTCAA
AATTCTTTCCAAGAGCTGCGCTTACGGGAGCTCTCTTGCGCTATCGATCAAATGGCAGAA
CTGTCGGTAGATGGCGTGTGCGAGATGCTTGAAGAGATAGGCTGCGGGGAGTATCAAGAA
GTGTTTCGAAAGAATTGTATTTCTGGCGATGCCTTACCGCTGCTGGCGGAGCACCATCTT
GTCGAAATGATGGGCTTAAAGCTTGGTCATGCCCTGAAGATTATTGCCCAGATACACCGT
CGCCTAGGAAACCATTGTTTCCTGATGACCAATCAGCTTCCTGCGTTTCGCCATGCCTCC
CCAATCGATTACCTCTGCCTCAGAAAGCAAGCGGCGACACCGAACGGACAGTCGGATAAC
ATTACAACGCCGGCAAGAGTCGCTAAAGAGGCTGAAATTAAAAAGGTTGCAGAAAACGAA
AAAGTTCCCGAAAATACTACTGCGGAATGATTTTATTCTGTTGTTGAGGCATGTTCGACT
TTAGAACTTTAATATATCTTGCTAAGAACCTGTATTCCACACTGGAAAAATCCAGTTGTC
TAGCTATTTTGTCAAATTAATTTCATTATATATTTGGGCCACTTAAAAGTAGAAATTTAT
ATCTTACCTCATGCTTTAAGTGGCTGCGTGTAATTCTGTTTAAAATGTTGTAAATGTTAA
TTTATAATGTGGCACAAGACACGCATATTTCCACATATATAGCTTACTGTGAAAGCGAAT
CTTCCATTTCGTATTATAAAGACACGGACCGTCACCGTTTCTTCACAATTTTGTTTCTTC
ATTTTTATTTTTCTTCACTCCTAGCCCTACCAATATAACATACCCACGTTATATTGCTGC
CTTACTGGGCAAATGTAACCAAATCCCTAATACGTTCTCACTGCGGGGTAACTTTTTTAG
GTTACAATTCATATCCATTAAGCCTATTTTGTAAATACGACTTACATACCCAGGAATACT
CTTCATTTGTTTATTATCAGTTCGCTTTGAAAGTTGTTTACGTTGTGCAATGTTTTCTTT
ATTTTTCACGCGTTCCTTTTGTGATCTTCATTCATTTGAGAATAAAATTTTCAAATTTGT
AAACT

InterProScan

SUPERFAMILY
SAM/pointed_sf (IPR013761) - T[478-543] 4.47E-15
SMART
SAM (IPR001660) - T[479-545] 2.0E-10
ProSiteProfiles
SAM (IPR001660) - T[482-545] 10.584
Pfam
SAM (IPR001660) - T[483-541] 2.2E-13

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value