Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.264.v3.A.SL1-1

Possible name(s)

YBX1; YBX2; YBX3

Gene model

KH2012:KH.C1.264

Location

KhC1 [3,320,111 / 3,326,393]

Sequences

Amino acid sequence

Length: 279

>KH.C1.264.v3.A.SL1-1
HPRSNIMSEQAGQLEQVTENAPVERKVLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIH
QTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRRRYK
PRYKPRPKEIKGEDGENERAEDGDPEQKPEQRRRPRKPRPRRPRREPEEGEAKENGVVAD
HVEGEDGEQPQRQRRPRKPRYRPKRSPQDGEAEVNGEVPRENGEEGEQRPARRRRPRNRP
KGPRRPKPTENENGNAVPNGQENADAPVAQSQVPVPKSE

Nucleotide sequence

Length: 1,717

>KH2012:KH.C1.264.v3.A.SL1-1
CAGACGAGCAGGGTACCATATTACTACGGTTCAGTAGAGACCAGTTGTCTGTGACGTCAG
GACAAACGACAACCTCCAAACTTCATTCCATCAACAAGCGAGGGAGAACGAGACGAGCGT
AAAAATCTATTAACATCCAAGATCTAACATCATGTCGGAGCAGGCCGGGCAGCTCGAACA
GGTCACTGAAAATGCCCCTGTCGAGAGAAAAGTTCTCGCATCCCATTGCTCTGGAGTTGT
CAAGTGGTTTAATGTGAGAAACGGTTACGGTTTCGTTAACCGCGACGACAACAAGGAGGA
CGTGTTCATTCACCAGACCGCCATCATCAAAAACAACCCAAAGAAATATCTTCGAAGTGT
TGGTGATGGAGAAAACGTAGAGTTCGATGTAGTGGAAGGTGAAAAGGGTTTGCCTGAAGC
TGCAAATGTAACCGGACCGAATGGTGAGCCTGTAAAAGGCAGCAAGTATGCTGCTGATAG
ACGCAGATACAAACCACGCTACAAACCAAGACCCAAGGAGATAAAAGGGGAGGATGGAGA
GAATGAAAGAGCGGAGGACGGTGATCCGGAGCAAAAACCAGAACAACGAAGAAGACCACG
TAAGCCGAGACCTCGTCGTCCTCGTAGAGAACCGGAGGAAGGAGAAGCAAAGGAGAATGG
AGTGGTTGCTGATCATGTTGAAGGGGAAGATGGCGAACAACCTCAACGACAACGTAGACC
AAGAAAGCCACGTTACCGACCAAAACGGTCCCCACAAGACGGGGAAGCTGAGGTAAATGG
TGAGGTCCCACGTGAGAATGGAGAGGAGGGTGAACAACGGCCAGCTCGTCGCCGACGTCC
CCGCAACCGCCCAAAGGGACCAAGACGCCCCAAACCCACGGAGAATGAGAACGGCAATGC
TGTACCAAATGGACAAGAGAATGCTGATGCACCTGTCGCGCAGAGCCAGGTTCCAGTACC
AAAATCAGAGTAAAAAGCGCGATCAGCGCTCGGTGGAGGGGTGGTTGTTTCGTCATATTG
TTGTAGCGTCAGGACAATAATGCTTTTTAAGTTTTCCTTGTGTGCATGGCCACCGTCGCC
CTAGCTTGCACCGTAGATTTAGTTAACACCCCAACAGCAGCAAGAACCCCTGACCGATAA
ATACTGCTTCTCTAACACCTTCTCGAATTTCTGTAATTGGTCGACCCTGCGCATGCGGTC
GCACGACACTGAATGTTTCCACCACGTAATTTTGAAAATTTAAGCTCAAAGCGCATTAAC
ATCACAAGCATTTTAAAGCAGCACTTGTGCCTGTAATTCACAGTGCTGATAAAGGTTAAC
ATCTAGTTTATGAAGTAAATTCTGTGTCTGAGACGTTTACCACCGGGCCTGTCTCTGCAC
ACGGACTACAATAAAAGGCCCTTTAACCAGTTATACTTGAATAAGCGTCCACGGAACGCC
CCTCGCCCGAAATTTTCATCGTTGGTTGTTGTTGTTGGGTTAATATTTAGTTTTCATCTG
ATACATTTAGTTGTTCACACCAAAACGATAACGTGGCGTTGATTCCGGCCGGGAACACCA
AAACGTTACTCGTTATCAACTCCACTTGATTGTCGCTGTTGTAACGAGTGCGTTTGCAAT
CAATATTGCTGTTTTCCTTTGCTGCTTGTTCAGTTTAATTTAGTTCACTGTAAATTAAAT
TCGGTTGTTCCCAGCCAAAATAAACCATACCATTTCA

InterProScan

SUPERFAMILY	NA-bd_OB-fold (IPR012340) - T[30-101] 2.57E-19
SMART	CSD (IPR011129) - T[33-102] 1.9E-19
Pfam	CSP_DNA-bd (IPR002059) - T[33-101] 5.5E-23
CDD	CSP_DNA-bd (IPR002059) - T[34-101] 1.64456E-19
PRINTS	CSP_DNA-bd (IPR002059) - T[34-49] 1.4E-19 - T[55-64] 1.4E-19 - T[74-92] 1.4E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
YBOX1_HUMAN	74.257 %	158	1.43E-46
YBOX3_HUMAN	78.495 %	155	4.8E-45
YBOX2_HUMAN	70.408 %	149	8.3E-43