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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S4...' > 
  2. Transcript 'KH2012:KH.C1.264.v3....'

Transcript Model

Transcript Id

KH2012:KH.C1.264.v3.A.nonSL18-1

Possible name(s)

YBX1; YBX2; YBX3

Gene model

KH2012:KH.C1.264

Location

KhC1 [3,320,200 / 3,326,393]

Sequences

Amino acid sequence

Length: 279

>KH.C1.264.v3.A.nonSL18-1
HPRSNIMSEQAGQLEQVTENAPVERKVLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIH
QTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRRRYK
PRYKPRPKEIKGEDGENERAEDGDPEQKPEQRRRPRKPRPRRPRREPEEGEAKENGVVAD
HVEGEDGEQPQRQRRPRKPRYRPKRSPQDGEAEVNGEVPRENGEEGEQRPARRRRPRNRP
KGPRRPKPTENENGNAVPNGQENADAPVAQSQVPVPKSE

Nucleotide sequence

Length: 1,628

>KH2012:KH.C1.264.v3.A.nonSL18-1
ATCAACAAGCGAGGGAGAACGAGACGAGCGTAAAAATCTATTAACATCCAAGATCTAACA
TCATGTCGGAGCAGGCCGGGCAGCTCGAACAGGTCACTGAAAATGCCCCTGTCGAGAGAA
AAGTTCTCGCATCCCATTGCTCTGGAGTTGTCAAGTGGTTTAATGTGAGAAACGGTTACG
GTTTCGTTAACCGCGACGACAACAAGGAGGACGTGTTCATTCACCAGACCGCCATCATCA
AAAACAACCCAAAGAAATATCTTCGAAGTGTTGGTGATGGAGAAAACGTAGAGTTCGATG
TAGTGGAAGGTGAAAAGGGTTTGCCTGAAGCTGCAAATGTAACCGGACCGAATGGTGAGC
CTGTAAAAGGCAGCAAGTATGCTGCTGATAGACGCAGATACAAACCACGCTACAAACCAA
GACCCAAGGAGATAAAAGGGGAGGATGGAGAGAATGAAAGAGCGGAGGACGGTGATCCGG
AGCAAAAACCAGAACAACGAAGAAGACCACGTAAGCCGAGACCTCGTCGTCCTCGTAGAG
AACCGGAGGAAGGAGAAGCAAAGGAGAATGGAGTGGTTGCTGATCATGTTGAAGGGGAAG
ATGGCGAACAACCTCAACGACAACGTAGACCAAGAAAGCCACGTTACCGACCAAAACGGT
CCCCACAAGACGGGGAAGCTGAGGTAAATGGTGAGGTCCCACGTGAGAATGGAGAGGAGG
GTGAACAACGGCCAGCTCGTCGCCGACGTCCCCGCAACCGCCCAAAGGGACCAAGACGCC
CCAAACCCACGGAGAATGAGAACGGCAATGCTGTACCAAATGGACAAGAGAATGCTGATG
CACCTGTCGCGCAGAGCCAGGTTCCAGTACCAAAATCAGAGTAAAAAGCGCGATCAGCGC
TCGGTGGAGGGGTGGTTGTTTCGTCATATTGTTGTAGCGTCAGGACAATAATGCTTTTTA
AGTTTTCCTTGTGTGCATGGCCACCGTCGCCCTAGCTTGCACCGTAGATTTAGTTAACAC
CCCAACAGCAGCAAGAACCCCTGACCGATAAATACTGCTTCTCTAACACCTTCTCGAATT
TCTGTAATTGGTCGACCCTGCGCATGCGGTCGCACGACACTGAATGTTTCCACCACGTAA
TTTTGAAAATTTAAGCTCAAAGCGCATTAACATCACAAGCATTTTAAAGCAGCACTTGTG
CCTGTAATTCACAGTGCTGATAAAGGTTAACATCTAGTTTATGAAGTAAATTCTGTGTCT
GAGACGTTTACCACCGGGCCTGTCTCTGCACACGGACTACAATAAAAGGCCCTTTAACCA
GTTATACTTGAATAAGCGTCCACGGAACGCCCCTCGCCCGAAATTTTCATCGTTGGTTGT
TGTTGTTGGGTTAATATTTAGTTTTCATCTGATACATTTAGTTGTTCACACCAAAACGAT
AACGTGGCGTTGATTCCGGCCGGGAACACCAAAACGTTACTCGTTATCAACTCCACTTGA
TTGTCGCTGTTGTAACGAGTGCGTTTGCAATCAATATTGCTGTTTTCCTTTGCTGCTTGT
TCAGTTTAATTTAGTTCACTGTAAATTAAATTCGGTTGTTCCCAGCCAAAATAAACCATA
CCATTTCA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[30-101] 2.57E-19
SMART
CSD (IPR011129) - T[33-102] 1.9E-19
Pfam
CSP_DNA-bd (IPR002059) - T[33-101] 5.5E-23
CDD
CSP_DNA-bd (IPR002059) - T[34-101] 1.64456E-19
PRINTS
CSP_DNA-bd (IPR002059) - T[34-49] 1.4E-19 - T[55-64] 1.4E-19 - T[74-92] 1.4E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
YBOX1_HUMAN 74.257 % 158 1.43E-46
YBOX3_HUMAN 78.495 % 155 4.8E-45
YBOX2_HUMAN 70.408 % 149 8.3E-43