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  1. Transcript 'KH2012:KH.C1.264.v2....'

Transcript Model

Transcript Id

KH2012:KH.C1.264.v2.A.nonSL6-1

Possible name(s)

YBX1; YBX2; YBX3

Gene model

KH2012:KH.C1.264

Location

KhC1 [3,320,141 / 3,326,393]

Sequences

Amino acid sequence

Length: 288

>KH.C1.264.v2.A.nonSL6-1
HPRSNIMSEQAGQLEQVTENAPVERKVLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIH
QTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRRRYK
PRYKPRPKEHTPEGNENQEGETENVSPEGMARNQQRPRRYYRRPFWIRRGPRKPQQEEGE
AKENGVVADHVEGEDGEQPQRQRRPRKPRYRPKRSPQDGEAEVNGEVPRENGEEGEQRPA
RRRRPRNRPKGPRRPKPTENENGNAVPNGQENADAPVAQSQVPVPKSE

Nucleotide sequence

Length: 1,714

>KH2012:KH.C1.264.v2.A.nonSL6-1
TCAGTAGAGACCAGTTGTCTGTGACGTCAGGACAAACGACAACCTCCAAACTTCATTCCA
TCAACAAGCGAGGGAGAACGAGACGAGCGTAAAAATCTATTAACATCCAAGATCTAACAT
CATGTCGGAGCAGGCCGGGCAGCTCGAACAGGTCACTGAAAATGCCCCTGTCGAGAGAAA
AGTTCTCGCATCCCATTGCTCTGGAGTTGTCAAGTGGTTTAATGTGAGAAACGGTTACGG
TTTCGTTAACCGCGACGACAACAAGGAGGACGTGTTCATTCACCAGACCGCCATCATCAA
AAACAACCCAAAGAAATATCTTCGAAGTGTTGGTGATGGAGAAAACGTAGAGTTCGATGT
AGTGGAAGGTGAAAAGGGTTTGCCTGAAGCTGCAAATGTAACCGGACCGAATGGTGAGCC
TGTAAAAGGCAGCAAGTATGCTGCTGATAGACGCAGATACAAACCACGCTACAAACCAAG
ACCCAAGGAGCATACTCCGGAGGGAAATGAGAACCAAGAGGGTGAGACTGAAAATGTTAG
CCCTGAGGGAATGGCCCGTAATCAGCAGCGTCCACGCCGCTATTACAGAAGACCTTTTTG
GATCCGAAGGGGGCCTAGAAAACCACAGCAGGAGGAAGGAGAAGCAAAGGAGAATGGAGT
GGTTGCTGATCATGTTGAAGGGGAAGATGGCGAACAACCTCAACGACAACGTAGACCAAG
AAAGCCACGTTACCGACCAAAACGGTCCCCACAAGACGGGGAAGCTGAGGTAAATGGTGA
GGTCCCACGTGAGAATGGAGAGGAGGGTGAACAACGGCCAGCTCGTCGCCGACGTCCCCG
CAACCGCCCAAAGGGACCAAGACGCCCCAAACCCACGGAGAATGAGAACGGCAATGCTGT
ACCAAATGGACAAGAGAATGCTGATGCACCTGTCGCGCAGAGCCAGGTTCCAGTACCAAA
ATCAGAGTAAAAAGCGCGATCAGCGCTCGGTGGAGGGGTGGTTGTTTCGTCATATTGTTG
TAGCGTCAGGACAATAATGCTTTTTAAGTTTTCCTTGTGTGCATGGCCACCGTCGCCCTA
GCTTGCACCGTAGATTTAGTTAACACCCCAACAGCAGCAAGAACCCCTGACCGATAAATA
CTGCTTCTCTAACACCTTCTCGAATTTCTGTAATTGGTCGACCCTGCGCATGCGGTCGCA
CGACACTGAATGTTTCCACCACGTAATTTTGAAAATTTAAGCTCAAAGCGCATTAACATC
ACAAGCATTTTAAAGCAGCACTTGTGCCTGTAATTCACAGTGCTGATAAAGGTTAACATC
TAGTTTATGAAGTAAATTCTGTGTCTGAGACGTTTACCACCGGGCCTGTCTCTGCACACG
GACTACAATAAAAGGCCCTTTAACCAGTTATACTTGAATAAGCGTCCACGGAACGCCCCT
CGCCCGAAATTTTCATCGTTGGTTGTTGTTGTTGGGTTAATATTTAGTTTTCATCTGATA
CATTTAGTTGTTCACACCAAAACGATAACGTGGCGTTGATTCCGGCCGGGAACACCAAAA
CGTTACTCGTTATCAACTCCACTTGATTGTCGCTGTTGTAACGAGTGCGTTTGCAATCAA
TATTGCTGTTTTCCTTTGCTGCTTGTTCAGTTTAATTTAGTTCACTGTAAATTAAATTCG
GTTGTTCCCAGCCAAAATAAACCATACCATTTCA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[30-101] 2.79E-19
SMART
CSD (IPR011129) - T[33-102] 1.9E-19
Pfam
CSP_DNA-bd (IPR002059) - T[33-101] 5.8E-23
PRINTS
CSP_DNA-bd (IPR002059) - T[34-49] 1.5E-19 - T[55-64] 1.5E-19 - T[74-92] 1.5E-19
CDD
CSP_DNA-bd (IPR002059) - T[34-101] 6.27312E-20

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
YBOX1_HUMAN 74.257 % 157 4.69E-46
YBOX3_HUMAN 78.495 % 155 1.02E-44
YBOX2_HUMAN 52.023 % 155 9.71E-45