Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.264.v2.A.nonSL18-1

Possible name(s)

YBX1; YBX2; YBX3

Gene model

KH2012:KH.C1.264

Location

KhC1 [3,320,200 / 3,326,393]

Sequences

Amino acid sequence

Length: 288

>KH.C1.264.v2.A.nonSL18-1
HPRSNIMSEQAGQLEQVTENAPVERKVLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIH
QTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRRRYK
PRYKPRPKEHTPEGNENQEGETENVSPEGMARNQQRPRRYYRRPFWIRRGPRKPQQEEGE
AKENGVVADHVEGEDGEQPQRQRRPRKPRYRPKRSPQDGEAEVNGEVPRENGEEGEQRPA
RRRRPRNRPKGPRRPKPTENENGNAVPNGQENADAPVAQSQVPVPKSE

Nucleotide sequence

Length: 1,655

>KH2012:KH.C1.264.v2.A.nonSL18-1
ATCAACAAGCGAGGGAGAACGAGACGAGCGTAAAAATCTATTAACATCCAAGATCTAACA
TCATGTCGGAGCAGGCCGGGCAGCTCGAACAGGTCACTGAAAATGCCCCTGTCGAGAGAA
AAGTTCTCGCATCCCATTGCTCTGGAGTTGTCAAGTGGTTTAATGTGAGAAACGGTTACG
GTTTCGTTAACCGCGACGACAACAAGGAGGACGTGTTCATTCACCAGACCGCCATCATCA
AAAACAACCCAAAGAAATATCTTCGAAGTGTTGGTGATGGAGAAAACGTAGAGTTCGATG
TAGTGGAAGGTGAAAAGGGTTTGCCTGAAGCTGCAAATGTAACCGGACCGAATGGTGAGC
CTGTAAAAGGCAGCAAGTATGCTGCTGATAGACGCAGATACAAACCACGCTACAAACCAA
GACCCAAGGAGCATACTCCGGAGGGAAATGAGAACCAAGAGGGTGAGACTGAAAATGTTA
GCCCTGAGGGAATGGCCCGTAATCAGCAGCGTCCACGCCGCTATTACAGAAGACCTTTTT
GGATCCGAAGGGGGCCTAGAAAACCACAGCAGGAGGAAGGAGAAGCAAAGGAGAATGGAG
TGGTTGCTGATCATGTTGAAGGGGAAGATGGCGAACAACCTCAACGACAACGTAGACCAA
GAAAGCCACGTTACCGACCAAAACGGTCCCCACAAGACGGGGAAGCTGAGGTAAATGGTG
AGGTCCCACGTGAGAATGGAGAGGAGGGTGAACAACGGCCAGCTCGTCGCCGACGTCCCC
GCAACCGCCCAAAGGGACCAAGACGCCCCAAACCCACGGAGAATGAGAACGGCAATGCTG
TACCAAATGGACAAGAGAATGCTGATGCACCTGTCGCGCAGAGCCAGGTTCCAGTACCAA
AATCAGAGTAAAAAGCGCGATCAGCGCTCGGTGGAGGGGTGGTTGTTTCGTCATATTGTT
GTAGCGTCAGGACAATAATGCTTTTTAAGTTTTCCTTGTGTGCATGGCCACCGTCGCCCT
AGCTTGCACCGTAGATTTAGTTAACACCCCAACAGCAGCAAGAACCCCTGACCGATAAAT
ACTGCTTCTCTAACACCTTCTCGAATTTCTGTAATTGGTCGACCCTGCGCATGCGGTCGC
ACGACACTGAATGTTTCCACCACGTAATTTTGAAAATTTAAGCTCAAAGCGCATTAACAT
CACAAGCATTTTAAAGCAGCACTTGTGCCTGTAATTCACAGTGCTGATAAAGGTTAACAT
CTAGTTTATGAAGTAAATTCTGTGTCTGAGACGTTTACCACCGGGCCTGTCTCTGCACAC
GGACTACAATAAAAGGCCCTTTAACCAGTTATACTTGAATAAGCGTCCACGGAACGCCCC
TCGCCCGAAATTTTCATCGTTGGTTGTTGTTGTTGGGTTAATATTTAGTTTTCATCTGAT
ACATTTAGTTGTTCACACCAAAACGATAACGTGGCGTTGATTCCGGCCGGGAACACCAAA
ACGTTACTCGTTATCAACTCCACTTGATTGTCGCTGTTGTAACGAGTGCGTTTGCAATCA
ATATTGCTGTTTTCCTTTGCTGCTTGTTCAGTTTAATTTAGTTCACTGTAAATTAAATTC
GGTTGTTCCCAGCCAAAATAAACCATACCATTTCA

InterProScan

SUPERFAMILY	NA-bd_OB-fold (IPR012340) - T[30-101] 2.79E-19
SMART	CSD (IPR011129) - T[33-102] 1.9E-19
Pfam	CSP_DNA-bd (IPR002059) - T[33-101] 5.8E-23
PRINTS	CSP_DNA-bd (IPR002059) - T[34-49] 1.5E-19 - T[55-64] 1.5E-19 - T[74-92] 1.5E-19
CDD	CSP_DNA-bd (IPR002059) - T[34-101] 6.27312E-20

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
YBOX1_HUMAN	74.257 %	157	4.69E-46
YBOX3_HUMAN	78.495 %	155	1.02E-44
YBOX2_HUMAN	52.023 %	155	9.71E-45