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  1. Transcript 'KH2012:KH.C1.264.v1....'

Transcript Model

Transcript Id

KH2012:KH.C1.264.v1.A.nonSL7-1

Possible name(s)

YBX1; YBX2; YBX3

Gene model

KH2012:KH.C1.264

Location

KhC1 [3,320,249 / 3,326,393]

Sequences

Amino acid sequence

Length: 324

>KH.C1.264.v1.A.nonSL7-1
RSNIMSEQAGQLEQVTENAPVERKVLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIHQT
AIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRRRYKPR
YKPRPKEHTPEGNENQEGETENVSPEGMARNQQRPRRYYRRPFWIRRGPRKPQQIKGEDG
ENERAEDGDPEQKPEQRRRPRKPRPRRPRREPEEGEAKENGVVADHVEGEDGEQPQRQRR
PRKPRYRPKRSPQDGEAEVNGEVPRENGEEGEQRPARRRRPRNRPKGPRRPKPTENENGN
AVPNGQENADAPVAQSQVPVPKSE

Nucleotide sequence

Length: 1,720

>KH2012:KH.C1.264.v1.A.nonSL7-1
AAGATCTAACATCATGTCGGAGCAGGCCGGGCAGCTCGAACAGGTCACTGAAAATGCCCC
TGTCGAGAGAAAAGTTCTCGCATCCCATTGCTCTGGAGTTGTCAAGTGGTTTAATGTGAG
AAACGGTTACGGTTTCGTTAACCGCGACGACAACAAGGAGGACGTGTTCATTCACCAGAC
CGCCATCATCAAAAACAACCCAAAGAAATATCTTCGAAGTGTTGGTGATGGAGAAAACGT
AGAGTTCGATGTAGTGGAAGGTGAAAAGGGTTTGCCTGAAGCTGCAAATGTAACCGGACC
GAATGGTGAGCCTGTAAAAGGCAGCAAGTATGCTGCTGATAGACGCAGATACAAACCACG
CTACAAACCAAGACCCAAGGAGCATACTCCGGAGGGAAATGAGAACCAAGAGGGTGAGAC
TGAAAATGTTAGCCCTGAGGGAATGGCCCGTAATCAGCAGCGTCCACGCCGCTATTACAG
AAGACCTTTTTGGATCCGAAGGGGGCCTAGAAAACCACAGCAGATAAAAGGGGAGGATGG
AGAGAATGAAAGAGCGGAGGACGGTGATCCGGAGCAAAAACCAGAACAACGAAGAAGACC
ACGTAAGCCGAGACCTCGTCGTCCTCGTAGAGAACCGGAGGAAGGAGAAGCAAAGGAGAA
TGGAGTGGTTGCTGATCATGTTGAAGGGGAAGATGGCGAACAACCTCAACGACAACGTAG
ACCAAGAAAGCCACGTTACCGACCAAAACGGTCCCCACAAGACGGGGAAGCTGAGGTAAA
TGGTGAGGTCCCACGTGAGAATGGAGAGGAGGGTGAACAACGGCCAGCTCGTCGCCGACG
TCCCCGCAACCGCCCAAAGGGACCAAGACGCCCCAAACCCACGGAGAATGAGAACGGCAA
TGCTGTACCAAATGGACAAGAGAATGCTGATGCACCTGTCGCGCAGAGCCAGGTTCCAGT
ACCAAAATCAGAGTAAAAAGCGCGATCAGCGCTCGGTGGAGGGGTGGTTGTTTCGTCATA
TTGTTGTAGCGTCAGGACAATAATGCTTTTTAAGTTTTCCTTGTGTGCATGGCCACCGTC
GCCCTAGCTTGCACCGTAGATTTAGTTAACACCCCAACAGCAGCAAGAACCCCTGACCGA
TAAATACTGCTTCTCTAACACCTTCTCGAATTTCTGTAATTGGTCGACCCTGCGCATGCG
GTCGCACGACACTGAATGTTTCCACCACGTAATTTTGAAAATTTAAGCTCAAAGCGCATT
AACATCACAAGCATTTTAAAGCAGCACTTGTGCCTGTAATTCACAGTGCTGATAAAGGTT
AACATCTAGTTTATGAAGTAAATTCTGTGTCTGAGACGTTTACCACCGGGCCTGTCTCTG
CACACGGACTACAATAAAAGGCCCTTTAACCAGTTATACTTGAATAAGCGTCCACGGAAC
GCCCCTCGCCCGAAATTTTCATCGTTGGTTGTTGTTGTTGGGTTAATATTTAGTTTTCAT
CTGATACATTTAGTTGTTCACACCAAAACGATAACGTGGCGTTGATTCCGGCCGGGAACA
CCAAAACGTTACTCGTTATCAACTCCACTTGATTGTCGCTGTTGTAACGAGTGCGTTTGC
AATCAATATTGCTGTTTTCCTTTGCTGCTTGTTCAGTTTAATTTAGTTCACTGTAAATTA
AATTCGGTTGTTCCCAGCCAAAATAAACCATACCATTTCA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[28-99] 3.43E-19
Pfam
CSP_DNA-bd (IPR002059) - T[31-99] 7.1E-23
SMART
CSD (IPR011129) - T[31-100] 1.9E-19
CDD
CSP_DNA-bd (IPR002059) - T[32-99] 2.0405E-19
PRINTS
CSP_DNA-bd (IPR002059) - T[32-47] 2.0E-19 - T[53-62] 2.0E-19 - T[72-90] 2.0E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
YBOX1_HUMAN 74.257 % 158 5.37E-46
YBOX3_HUMAN 78.495 % 155 1.76E-44
YBOX2_HUMAN 51.955 % 155 2.5E-44