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  1. Transcript 'KH2012:KH.C1.264.v1....'

Transcript Model

Transcript Id

KH2012:KH.C1.264.v1.A.nonSL5-1

Possible name(s)

YBX1; YBX2; YBX3

Gene model

KH2012:KH.C1.264

Location

KhC1 [3,320,239 / 3,326,393]

Sequences

Amino acid sequence

Length: 326

>KH.C1.264.v1.A.nonSL5-1
HPRSNIMSEQAGQLEQVTENAPVERKVLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIH
QTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRRRYK
PRYKPRPKEHTPEGNENQEGETENVSPEGMARNQQRPRRYYRRPFWIRRGPRKPQQIKGE
DGENERAEDGDPEQKPEQRRRPRKPRPRRPRREPEEGEAKENGVVADHVEGEDGEQPQRQ
RRPRKPRYRPKRSPQDGEAEVNGEVPRENGEEGEQRPARRRRPRNRPKGPRRPKPTENEN
GNAVPNGQENADAPVAQSQVPVPKSE

Nucleotide sequence

Length: 1,730

>KH2012:KH.C1.264.v1.A.nonSL5-1
ATTAACATCCAAGATCTAACATCATGTCGGAGCAGGCCGGGCAGCTCGAACAGGTCACTG
AAAATGCCCCTGTCGAGAGAAAAGTTCTCGCATCCCATTGCTCTGGAGTTGTCAAGTGGT
TTAATGTGAGAAACGGTTACGGTTTCGTTAACCGCGACGACAACAAGGAGGACGTGTTCA
TTCACCAGACCGCCATCATCAAAAACAACCCAAAGAAATATCTTCGAAGTGTTGGTGATG
GAGAAAACGTAGAGTTCGATGTAGTGGAAGGTGAAAAGGGTTTGCCTGAAGCTGCAAATG
TAACCGGACCGAATGGTGAGCCTGTAAAAGGCAGCAAGTATGCTGCTGATAGACGCAGAT
ACAAACCACGCTACAAACCAAGACCCAAGGAGCATACTCCGGAGGGAAATGAGAACCAAG
AGGGTGAGACTGAAAATGTTAGCCCTGAGGGAATGGCCCGTAATCAGCAGCGTCCACGCC
GCTATTACAGAAGACCTTTTTGGATCCGAAGGGGGCCTAGAAAACCACAGCAGATAAAAG
GGGAGGATGGAGAGAATGAAAGAGCGGAGGACGGTGATCCGGAGCAAAAACCAGAACAAC
GAAGAAGACCACGTAAGCCGAGACCTCGTCGTCCTCGTAGAGAACCGGAGGAAGGAGAAG
CAAAGGAGAATGGAGTGGTTGCTGATCATGTTGAAGGGGAAGATGGCGAACAACCTCAAC
GACAACGTAGACCAAGAAAGCCACGTTACCGACCAAAACGGTCCCCACAAGACGGGGAAG
CTGAGGTAAATGGTGAGGTCCCACGTGAGAATGGAGAGGAGGGTGAACAACGGCCAGCTC
GTCGCCGACGTCCCCGCAACCGCCCAAAGGGACCAAGACGCCCCAAACCCACGGAGAATG
AGAACGGCAATGCTGTACCAAATGGACAAGAGAATGCTGATGCACCTGTCGCGCAGAGCC
AGGTTCCAGTACCAAAATCAGAGTAAAAAGCGCGATCAGCGCTCGGTGGAGGGGTGGTTG
TTTCGTCATATTGTTGTAGCGTCAGGACAATAATGCTTTTTAAGTTTTCCTTGTGTGCAT
GGCCACCGTCGCCCTAGCTTGCACCGTAGATTTAGTTAACACCCCAACAGCAGCAAGAAC
CCCTGACCGATAAATACTGCTTCTCTAACACCTTCTCGAATTTCTGTAATTGGTCGACCC
TGCGCATGCGGTCGCACGACACTGAATGTTTCCACCACGTAATTTTGAAAATTTAAGCTC
AAAGCGCATTAACATCACAAGCATTTTAAAGCAGCACTTGTGCCTGTAATTCACAGTGCT
GATAAAGGTTAACATCTAGTTTATGAAGTAAATTCTGTGTCTGAGACGTTTACCACCGGG
CCTGTCTCTGCACACGGACTACAATAAAAGGCCCTTTAACCAGTTATACTTGAATAAGCG
TCCACGGAACGCCCCTCGCCCGAAATTTTCATCGTTGGTTGTTGTTGTTGGGTTAATATT
TAGTTTTCATCTGATACATTTAGTTGTTCACACCAAAACGATAACGTGGCGTTGATTCCG
GCCGGGAACACCAAAACGTTACTCGTTATCAACTCCACTTGATTGTCGCTGTTGTAACGA
GTGCGTTTGCAATCAATATTGCTGTTTTCCTTTGCTGCTTGTTCAGTTTAATTTAGTTCA
CTGTAAATTAAATTCGGTTGTTCCCAGCCAAAATAAACCATACCATTTCA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[30-101] 3.43E-19
SMART
CSD (IPR011129) - T[33-102] 1.9E-19
Pfam
CSP_DNA-bd (IPR002059) - T[33-101] 7.2E-23
PRINTS
CSP_DNA-bd (IPR002059) - T[34-49] 2.1E-19 - T[55-64] 2.1E-19 - T[74-92] 2.1E-19
CDD
CSP_DNA-bd (IPR002059) - T[34-101] 1.79107E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
YBOX1_HUMAN 74.257 % 158 5.32E-46
YBOX3_HUMAN 78.495 % 155 1.89E-44
YBOX2_HUMAN 51.955 % 155 2.72E-44