Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.264.v1.A.nonSL11-1

Possible name(s)

YBX1; YBX2; YBX3

Gene model

KH2012:KH.C1.264

Location

KhC1 [3,320,152 / 3,326,393]

Sequences

Amino acid sequence

Length: 326

>KH.C1.264.v1.A.nonSL11-1
HPRSNIMSEQAGQLEQVTENAPVERKVLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIH
QTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRRRYK
PRYKPRPKEHTPEGNENQEGETENVSPEGMARNQQRPRRYYRRPFWIRRGPRKPQQIKGE
DGENERAEDGDPEQKPEQRRRPRKPRPRRPRREPEEGEAKENGVVADHVEGEDGEQPQRQ
RRPRKPRYRPKRSPQDGEAEVNGEVPRENGEEGEQRPARRRRPRNRPKGPRRPKPTENEN
GNAVPNGQENADAPVAQSQVPVPKSE

Nucleotide sequence

Length: 1,817

>KH2012:KH.C1.264.v1.A.nonSL11-1
CAGTTGTCTGTGACGTCAGGACAAACGACAACCTCCAAACTTCATTCCATCAACAAGCGA
GGGAGAACGAGACGAGCGTAAAAATCTATTAACATCCAAGATCTAACATCATGTCGGAGC
AGGCCGGGCAGCTCGAACAGGTCACTGAAAATGCCCCTGTCGAGAGAAAAGTTCTCGCAT
CCCATTGCTCTGGAGTTGTCAAGTGGTTTAATGTGAGAAACGGTTACGGTTTCGTTAACC
GCGACGACAACAAGGAGGACGTGTTCATTCACCAGACCGCCATCATCAAAAACAACCCAA
AGAAATATCTTCGAAGTGTTGGTGATGGAGAAAACGTAGAGTTCGATGTAGTGGAAGGTG
AAAAGGGTTTGCCTGAAGCTGCAAATGTAACCGGACCGAATGGTGAGCCTGTAAAAGGCA
GCAAGTATGCTGCTGATAGACGCAGATACAAACCACGCTACAAACCAAGACCCAAGGAGC
ATACTCCGGAGGGAAATGAGAACCAAGAGGGTGAGACTGAAAATGTTAGCCCTGAGGGAA
TGGCCCGTAATCAGCAGCGTCCACGCCGCTATTACAGAAGACCTTTTTGGATCCGAAGGG
GGCCTAGAAAACCACAGCAGATAAAAGGGGAGGATGGAGAGAATGAAAGAGCGGAGGACG
GTGATCCGGAGCAAAAACCAGAACAACGAAGAAGACCACGTAAGCCGAGACCTCGTCGTC
CTCGTAGAGAACCGGAGGAAGGAGAAGCAAAGGAGAATGGAGTGGTTGCTGATCATGTTG
AAGGGGAAGATGGCGAACAACCTCAACGACAACGTAGACCAAGAAAGCCACGTTACCGAC
CAAAACGGTCCCCACAAGACGGGGAAGCTGAGGTAAATGGTGAGGTCCCACGTGAGAATG
GAGAGGAGGGTGAACAACGGCCAGCTCGTCGCCGACGTCCCCGCAACCGCCCAAAGGGAC
CAAGACGCCCCAAACCCACGGAGAATGAGAACGGCAATGCTGTACCAAATGGACAAGAGA
ATGCTGATGCACCTGTCGCGCAGAGCCAGGTTCCAGTACCAAAATCAGAGTAAAAAGCGC
GATCAGCGCTCGGTGGAGGGGTGGTTGTTTCGTCATATTGTTGTAGCGTCAGGACAATAA
TGCTTTTTAAGTTTTCCTTGTGTGCATGGCCACCGTCGCCCTAGCTTGCACCGTAGATTT
AGTTAACACCCCAACAGCAGCAAGAACCCCTGACCGATAAATACTGCTTCTCTAACACCT
TCTCGAATTTCTGTAATTGGTCGACCCTGCGCATGCGGTCGCACGACACTGAATGTTTCC
ACCACGTAATTTTGAAAATTTAAGCTCAAAGCGCATTAACATCACAAGCATTTTAAAGCA
GCACTTGTGCCTGTAATTCACAGTGCTGATAAAGGTTAACATCTAGTTTATGAAGTAAAT
TCTGTGTCTGAGACGTTTACCACCGGGCCTGTCTCTGCACACGGACTACAATAAAAGGCC
CTTTAACCAGTTATACTTGAATAAGCGTCCACGGAACGCCCCTCGCCCGAAATTTTCATC
GTTGGTTGTTGTTGTTGGGTTAATATTTAGTTTTCATCTGATACATTTAGTTGTTCACAC
CAAAACGATAACGTGGCGTTGATTCCGGCCGGGAACACCAAAACGTTACTCGTTATCAAC
TCCACTTGATTGTCGCTGTTGTAACGAGTGCGTTTGCAATCAATATTGCTGTTTTCCTTT
GCTGCTTGTTCAGTTTAATTTAGTTCACTGTAAATTAAATTCGGTTGTTCCCAGCCAAAA
TAAACCATACCATTTCA

InterProScan

SUPERFAMILY	NA-bd_OB-fold (IPR012340) - T[30-101] 3.43E-19
SMART	CSD (IPR011129) - T[33-102] 1.9E-19
Pfam	CSP_DNA-bd (IPR002059) - T[33-101] 7.2E-23
PRINTS	CSP_DNA-bd (IPR002059) - T[34-49] 2.1E-19 - T[55-64] 2.1E-19 - T[74-92] 2.1E-19
CDD	CSP_DNA-bd (IPR002059) - T[34-101] 1.79107E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
YBOX1_HUMAN	74.257 %	158	5.32E-46
YBOX3_HUMAN	78.495 %	155	1.89E-44
YBOX2_HUMAN	51.955 %	155	2.72E-44