- Transcript 'KH2012:KH.C1.242.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.242.v1.A.nonSL2-1
Possible name(s)
ACTA1; ACTA2; ACTC1
Gene model
Location
KhC1 [7,723,611 / 7,725,905]
Amino acid sequence
Length: 399
>KH.C1.242.v1.A.nonSL2-1
TFTRLRASSLHSTNSSKQTSIMSDSEEDQTALVCDNGSGLVKSGFAGDDAPRAVFPSIVG
RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRV
APEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVMDAG
DGVSHNVPIYEGYALPHAIARLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKL
CYVALDFEQEMATAASSTSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHE
TTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
YSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF
Nucleotide sequence
Length: 1,759
>KH2012:KH.C1.242.v1.A.nonSL2-1
ACATTCACTCGCTTAAGAGCTTCAAGTCTTCACTCAACCAACTCAAGCAAGCAAACTTCA
ATCATGTCGGACTCAGAAGAAGATCAGACCGCTCTGGTTTGCGACAACGGATCAGGATTA
GTGAAATCAGGATTCGCCGGAGATGACGCACCTCGTGCTGTCTTCCCATCCATCGTTGGT
CGACCCCGCCACCAGGGTGTCATGGTCGGTATGGGACAAAAAGACAGCTACGTTGGTGAC
GAAGCACAAAGCAAGCGGGGTATTCTTACCTTGAAATACCCGATTGAGCACGGTATCATC
ACCAACTGGGACGACATGGAAAAGATCTGGCATCACACTTTCTATAACGAGCTCCGTGTT
GCTCCCGAAGAACACCCGACTCTGCTTACCGAAGCCCCACTTAACCCAAAGGCTAACCGA
GAAAAAATGACCCAGATCATGTTTGAAACCTTCAACGTACCGGCCATGTATGTAGCCATC
CAAGCCGTTCTTTCTTTATACGCATCTGGACGTACAACAGGTATCGTCATGGATGCTGGA
GACGGTGTTTCACATAACGTTCCAATCTACGAGGGATACGCGCTCCCTCACGCCATCGCC
CGGTTGGATTTAGCTGGACGAGATCTTACTGATTATTTGATGAAGATTCTTACAGAGAGA
GGCTACTCTTTCGTTACAACTGCCGAGCGTGAAATCGTTCGAGATATCAAAGAGAAGCTC
TGCTACGTGGCGCTCGACTTCGAGCAGGAGATGGCCACCGCAGCATCCTCCACCTCCCTA
GAGAAGAGCTACGAACTTCCCGACGGTCAAGTCATTACTATCGGAAACGAGAGGTTCCGA
TGCCCGGAAACTTTATTCCAACCTTCCTTTATCGGTATGGAATCTGCTGGAATCCACGAG
ACCACCTACAACTCCATCATGAAGTGCGACATTGACATCCGAAAGGATCTTTACGCCAAC
AACGTTCTCTCCGGAGGTACAACCATGTACCCTGGTATCGCTGACAGAATGCAGAAGGAG
ATCACTGCTCTTGCTCCCAGCACCATGAAGATCAAGATCATTGCCCCACCAGAGAGGAAA
TACTCCGTCTGGATCGGAGGATCCATCCTCGCATCTCTCTCCACCTTCCAACAGATGTGG
ATCACCAAGCAAGAGTACGACGAAGCTGGCCCATCCATTGTCCACCGAAAATGTTTCTAA
ATATTAAGTTTTTGGTGTCATCAGTTTTTATTAAAACAATACAAACCGCTTTTTCACACA
AAGATTTTCGCTTGTTTTGTAGTAGGTTGAATTTGTTTAGTAGTTACAGGTGTTTAGTTT
CTAGTGTTAGAAAACCTATGTCTTTTTTCGTTATTAACCCAAATTTAAGTAAAATGTACA
GGCAAAACGACCAACAGCAGTGAGTATATATACCGTAACGGTTTGATAGTTCGCATAGAT
TTACTGATCTGGTCATCAAAATTTTGCATAATACATATAACAGTTGAATATACATATGGT
ACTTATGCTGCTCGCCGGTTCTTTACATTATGATCATTGTGATTTAAAACCGTCAATGTT
AGCTGTTTATACACCATCGCAGTGTTTCTTATTACCATCATCTATTTTCTGGCATCGTTT
CCTCAACTCTTTTCTTCCTTCCGGTGTTAGTCGCATTGAGAAGCAACATTATAGTTACAA
TGAGCGGCTGTATATTCTGCTGTGGCATTGTTAGAGCTGTAGTGTTACGTACGCAGTTTC
TAATTTTCTACGATCGTTT
| PANTHER |
Actin (IPR004000) - T[26-398] 2.4E-266 |
| Pfam |
Actin (IPR004000) - T[28-399] 4.3E-147 |
| SMART |
Actin (IPR004000) - T[29-399] 2.0E-232 |
| PRINTS |
Actin (IPR004000) - T[50-59] 3.2E-57 - T[73-84] 3.2E-57 - T[85-107] 3.2E-57 - T[139-152] 3.2E-57 - T[164-183] 3.2E-57 - T[260-276] 3.2E-57 |
| ProSitePatterns |
Actin_CS (IPR004001) - T[77-87] . - T[380-388] . |
| ProSitePatterns |
Actin/actin-like_CS (IPR020902) - T[128-140] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ACTA_HUMAN | 97.059 % | 769 | 0 |
| ACTS_HUMAN | 97.059 % | 769 | 0 |
| ACTC_HUMAN | 96.825 % | 769 | 0 |