- Transcript 'Boschl.CG.Botznik201...' >
- Clone 'AHC0AAA12YC05' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.C12.188.v3...'
Transcript Model
Transcript Id
KH2012:KH.C12.188.v3.A.SL2-1
Possible name(s)
RPS4X; RPS4Y1; RPS4Y2
Gene model
Location
KhC12 [398,861 / 403,095]
Amino acid sequence
Length: 258
>KH.C12.188.v3.A.SL2-1
ARGPKKHLKRLNAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLCIFLRNRLHYALTYDET
KRILMQRLVKVDGKVRTDTTYPAGFMDVITIDKTAEYFRLIYDVKGRFAVHRITSDEAKY
KLCKVKKVATAPKGVPYLVTHDARTIRYPNPDIKVHDTVVVDIASGKITGFVHLDSGNMC
MITGGHNLGRVGTVMHRERHPGSFDIIHVKDALGHTFATRLSNVFIIGQANKPMVSLPRG
KGIKLTIAEERDRRLATK
Nucleotide sequence
Length: 822
>KH2012:KH.C12.188.v3.A.SL2-1
GCGCGTGGACCAAAGAAGCATCTGAAGCGCTTAAATGCGCCCAAGCATTGGATGTTAGAC
AAACTGACGGGTGTTTTCGCTCCCAGACCATCCACAGGACCCCACAAACTGCGAGAGTGC
CTTCCTCTCTGTATTTTCCTCCGTAATCGTCTGCATTATGCTCTCACTTACGATGAAACG
AAGCGGATCCTCATGCAAAGATTGGTGAAGGTTGACGGTAAAGTTCGAACTGACACAACA
TATCCAGCTGGATTTATGGACGTAATCACCATTGACAAGACAGCTGAGTATTTCCGTCTC
ATCTACGACGTGAAAGGACGTTTTGCTGTTCATAGAATTACTTCTGATGAAGCAAAGTAC
AAGTTGTGCAAGGTGAAGAAGGTTGCCACGGCGCCCAAGGGAGTCCCGTACCTCGTCACC
CACGATGCACGAACCATTCGTTACCCCAACCCCGATATTAAGGTACACGATACAGTGGTT
GTTGATATCGCGAGTGGAAAGATTACTGGTTTTGTGCATTTGGACAGCGGTAACATGTGC
ATGATCACTGGAGGTCACAACTTGGGGCGAGTAGGAACAGTTATGCATAGAGAGAGACAT
CCAGGATCATTTGACATCATCCACGTAAAAGATGCGCTCGGCCACACCTTTGCTACCCGT
CTATCGAATGTTTTCATCATAGGCCAGGCCAACAAACCAATGGTTTCCCTTCCACGAGGA
AAAGGAATCAAACTGACGATCGCTGAAGAGAGAGACCGTCGGTTGGCAACAAAGTAAATG
CCATTGAATTGAGCATTTCAATAAATATTGAAATCGGATTTA
| PIRSF |
Ribosomal_S4e (IPR000876) - T[1-240] 8.8E-96 |
| PANTHER |
Ribosomal_S4e (IPR000876) - T[1-258] 2.6E-142 |
| Pfam |
Ribosomal_S4e_N (IPR013843) - T[2-38] 3.9E-22 |
| Hamap |
Ribosomal_S4e (IPR000876) - T[6-237] 35.469 |
| ProSitePatterns |
Ribosomal_S4e_N_CS (IPR018199) - T[7-21] . |
| ProSiteProfiles |
S4_RNA-bd (IPR002942) - T[41-104] 9.298 |
| Pfam |
S4_RNA-bd (IPR002942) - T[45-89] 2.1E-5 |
| CDD |
S4_RNA-bd (IPR002942) - T[61-111] 6.36151E-4 |
| ProDom |
Ribosomal_S4e_central_region (IPR013845) - T[86-180] 1.0E-36 |
| Pfam |
Ribosomal_S4e_central_region (IPR013845) - T[94-168] 3.9E-37 |
| Gene3D |
Ribosomal_S4e_central_sf (IPR038237) - T[121-170] 7.4E-26 |
| Gene3D |
Rib_L2_dom2 (IPR014722) - T[174-244] 6.3E-36 |
| Pfam |
KOW (IPR005824) - T[177-210] 2.4E-5 |
| Pfam |
40S_S4_C (IPR032277) - T[211-258] 8.4E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RS4X_HUMAN | 75.969 % | 426 | 5.07E-153 |
| RS4Y1_HUMAN | 74.419 % | 422 | 2.13E-151 |
| RS4Y2_HUMAN | 72.093 % | 407 | 2.6E-145 |