- Transcript 'KH2012:KH.C12.200.v1...' >
- Transcript 'KH2012:KH.C12.188.v3...'
Transcript Model
Transcript Id
KH2012:KH.C12.188.v3.A.nonSL3-1
Possible name(s)
RPS4X; RPS4Y1; RPS4Y2
Gene model
Location
KhC12 [398,841 / 403,095]
Amino acid sequence
Length: 261
>KH.C12.188.v3.A.nonSL3-1
FFQARGPKKHLKRLNAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLCIFLRNRLHYALTY
DETKRILMQRLVKVDGKVRTDTTYPAGFMDVITIDKTAEYFRLIYDVKGRFAVHRITSDE
AKYKLCKVKKVATAPKGVPYLVTHDARTIRYPNPDIKVHDTVVVDIASGKITGFVHLDSG
NMCMITGGHNLGRVGTVMHRERHPGSFDIIHVKDALGHTFATRLSNVFIIGQANKPMVSL
PRGKGIKLTIAEERDRRLATK
Nucleotide sequence
Length: 842
>KH2012:KH.C12.188.v3.A.nonSL3-1
CCTCGGTCTAATTCTTTCAGGCGCGTGGACCAAAGAAGCATCTGAAGCGCTTAAATGCGC
CCAAGCATTGGATGTTAGACAAACTGACGGGTGTTTTCGCTCCCAGACCATCCACAGGAC
CCCACAAACTGCGAGAGTGCCTTCCTCTCTGTATTTTCCTCCGTAATCGTCTGCATTATG
CTCTCACTTACGATGAAACGAAGCGGATCCTCATGCAAAGATTGGTGAAGGTTGACGGTA
AAGTTCGAACTGACACAACATATCCAGCTGGATTTATGGACGTAATCACCATTGACAAGA
CAGCTGAGTATTTCCGTCTCATCTACGACGTGAAAGGACGTTTTGCTGTTCATAGAATTA
CTTCTGATGAAGCAAAGTACAAGTTGTGCAAGGTGAAGAAGGTTGCCACGGCGCCCAAGG
GAGTCCCGTACCTCGTCACCCACGATGCACGAACCATTCGTTACCCCAACCCCGATATTA
AGGTACACGATACAGTGGTTGTTGATATCGCGAGTGGAAAGATTACTGGTTTTGTGCATT
TGGACAGCGGTAACATGTGCATGATCACTGGAGGTCACAACTTGGGGCGAGTAGGAACAG
TTATGCATAGAGAGAGACATCCAGGATCATTTGACATCATCCACGTAAAAGATGCGCTCG
GCCACACCTTTGCTACCCGTCTATCGAATGTTTTCATCATAGGCCAGGCCAACAAACCAA
TGGTTTCCCTTCCACGAGGAAAAGGAATCAAACTGACGATCGCTGAAGAGAGAGACCGTC
GGTTGGCAACAAAGTAAATGCCATTGAATTGAGCATTTCAATAAATATTGAAATCGGATT
TA
| PIRSF |
Ribosomal_S4e (IPR000876) - T[3-243] 6.8E-96 |
| PANTHER |
Ribosomal_S4e (IPR000876) - T[4-261] 1.6E-142 |
| Pfam |
Ribosomal_S4e_N (IPR013843) - T[5-41] 4.0E-22 |
| Hamap |
Ribosomal_S4e (IPR000876) - T[9-240] 35.469 |
| ProSitePatterns |
Ribosomal_S4e_N_CS (IPR018199) - T[10-24] . |
| ProSiteProfiles |
S4_RNA-bd (IPR002942) - T[44-107] 9.298 |
| Pfam |
S4_RNA-bd (IPR002942) - T[48-92] 2.1E-5 |
| CDD |
S4_RNA-bd (IPR002942) - T[64-114] 5.56013E-4 |
| ProDom |
Ribosomal_S4e_central_region (IPR013845) - T[89-183] 1.0E-36 |
| Pfam |
Ribosomal_S4e_central_region (IPR013845) - T[97-171] 4.0E-37 |
| Gene3D |
Ribosomal_S4e_central_sf (IPR038237) - T[124-173] 7.6E-26 |
| Gene3D |
Rib_L2_dom2 (IPR014722) - T[177-247] 6.4E-36 |
| Pfam |
KOW (IPR005824) - T[180-213] 2.4E-5 |
| Pfam |
40S_S4_C (IPR032277) - T[214-261] 8.6E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RS4X_HUMAN | 75.969 % | 426 | 8.29E-153 |
| RS4Y1_HUMAN | 74.419 % | 422 | 2.98E-151 |
| RS4Y2_HUMAN | 72.093 % | 406 | 3.3E-145 |