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- Transcript 'KH2012:KH.C12.188.v2...'
Transcript Model
Transcript Id
KH2012:KH.C12.188.v2.A.nonSL5-1
Possible name(s)
RPS4X; RPS4Y1; RPS4Y2
Gene model
Location
KhC12 [398,618 / 403,095]
Amino acid sequence
Length: 264
>KH.C12.188.v2.A.nonSL5-1
FLETRMARGPKKHLKRLNAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLCIFLRNRLHYA
LTYDETKRILMQRLVKVDGKVRTDTTYPAGFMDVITIDKTAEYFRLIYDVKGRFAVHRIT
SDEAKYKLCKVKKVATAPKGVPYLVTHDARTIRYPNPDIKVHDTVVVDIASGKITGFVHL
DSGNMCMITGGHNLGRVGTVMHRERHPGSFDIIHVKDALGHTFATRLSNVFIIGQANKPM
VSLPRGKGIKLTIAEERDRRLATK
Nucleotide sequence
Length: 842
>KH2012:KH.C12.188.v2.A.nonSL5-1
CCTTTTTAGAAACCAGGATGGCGCGTGGACCAAAGAAGCATCTGAAGCGCTTAAATGCGC
CCAAGCATTGGATGTTAGACAAACTGACGGGTGTTTTCGCTCCCAGACCATCCACAGGAC
CCCACAAACTGCGAGAGTGCCTTCCTCTCTGTATTTTCCTCCGTAATCGTCTGCATTATG
CTCTCACTTACGATGAAACGAAGCGGATCCTCATGCAAAGATTGGTGAAGGTTGACGGTA
AAGTTCGAACTGACACAACATATCCAGCTGGATTTATGGACGTAATCACCATTGACAAGA
CAGCTGAGTATTTCCGTCTCATCTACGACGTGAAAGGACGTTTTGCTGTTCATAGAATTA
CTTCTGATGAAGCAAAGTACAAGTTGTGCAAGGTGAAGAAGGTTGCCACGGCGCCCAAGG
GAGTCCCGTACCTCGTCACCCACGATGCACGAACCATTCGTTACCCCAACCCCGATATTA
AGGTACACGATACAGTGGTTGTTGATATCGCGAGTGGAAAGATTACTGGTTTTGTGCATT
TGGACAGCGGTAACATGTGCATGATCACTGGAGGTCACAACTTGGGGCGAGTAGGAACAG
TTATGCATAGAGAGAGACATCCAGGATCATTTGACATCATCCACGTAAAAGATGCGCTCG
GCCACACCTTTGCTACCCGTCTATCGAATGTTTTCATCATAGGCCAGGCCAACAAACCAA
TGGTTTCCCTTCCACGAGGAAAAGGAATCAAACTGACGATCGCTGAAGAGAGAGACCGTC
GGTTGGCAACAAAGTAAATGCCATTGAATTGAGCATTTCAATAAATATTGAAATCGGATT
TA
| PANTHER |
Ribosomal_S4e (IPR000876) - T[6-264] 3.8E-143 |
| PIRSF |
Ribosomal_S4e (IPR000876) - T[6-246] 3.7E-96 |
| Pfam |
Ribosomal_S4e_N (IPR013843) - T[8-44] 4.1E-22 |
| Hamap |
Ribosomal_S4e (IPR000876) - T[12-243] 35.469 |
| ProSitePatterns |
Ribosomal_S4e_N_CS (IPR018199) - T[13-27] . |
| ProSiteProfiles |
S4_RNA-bd (IPR002942) - T[47-110] 9.298 |
| Pfam |
S4_RNA-bd (IPR002942) - T[51-95] 2.1E-5 |
| CDD |
S4_RNA-bd (IPR002942) - T[67-117] 5.80109E-4 |
| ProDom |
Ribosomal_S4e_central_region (IPR013845) - T[92-186] 1.0E-36 |
| Pfam |
Ribosomal_S4e_central_region (IPR013845) - T[100-174] 4.1E-37 |
| Gene3D |
Ribosomal_S4e_central_sf (IPR038237) - T[127-176] 7.7E-26 |
| Gene3D |
Rib_L2_dom2 (IPR014722) - T[180-250] 6.5E-36 |
| Pfam |
KOW (IPR005824) - T[183-216] 2.5E-5 |
| Pfam |
40S_S4_C (IPR032277) - T[217-264] 8.8E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RS4X_HUMAN | 76.062 % | 428 | 9.24E-154 |
| RS4Y1_HUMAN | 74.517 % | 425 | 2.29E-152 |
| RS4Y2_HUMAN | 72.201 % | 409 | 4.44E-146 |