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- Transcript 'KH2012:KH.C12.188.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.188.v1.A.nonSL1-1
Possible name(s)
RPS4X; RPS4Y1; RPS4Y2
Gene model
Location
KhC12 [398,615 / 403,095]
Amino acid sequence
Length: 265
>KH.C12.188.v1.A.nonSL1-1
SFLETRMARGPKKHLKRLNAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLCIFLRNRLHY
ALTYDETKRILMQRLVKVDGKVRTDTTYPAGFMDVITIDKTAEYFRLIYDVKGRFAVHRI
TSDEAKYKLCKVKKVATAPKGVPYLVTHDARTIRYPNPDIKVHDTVVVDIASGKITGFVH
LDSGNMCMITGGHNLGRVGTVMHRERHPGSFDIIHVKDALGHTFATRLSNVFIIGQANKP
MVSLPRGKGIKLTIAEERDRRLATK
Nucleotide sequence
Length: 845
>KH2012:KH.C12.188.v1.A.nonSL1-1
CTTCCTTTTTAGAAACCAGGATGGCGCGTGGACCAAAGAAGCATCTGAAGCGCTTAAATG
CGCCCAAGCATTGGATGTTAGACAAACTGACGGGTGTTTTCGCTCCCAGACCATCCACAG
GACCCCACAAACTGCGAGAGTGCCTTCCTCTCTGTATTTTCCTCCGTAATCGTCTGCATT
ATGCTCTCACTTACGATGAAACGAAGCGGATCCTCATGCAAAGATTGGTGAAGGTTGACG
GTAAAGTTCGAACTGACACAACATATCCAGCTGGATTTATGGACGTAATCACCATTGACA
AGACAGCTGAGTATTTCCGTCTCATCTACGACGTGAAAGGACGTTTTGCTGTTCATAGAA
TTACTTCTGATGAAGCAAAGTACAAGTTGTGCAAGGTGAAGAAGGTTGCCACGGCGCCCA
AGGGAGTCCCGTACCTCGTCACCCACGATGCACGAACCATTCGTTACCCCAACCCCGATA
TTAAGGTACACGATACAGTGGTTGTTGATATCGCGAGTGGAAAGATTACTGGTTTTGTGC
ATTTGGACAGCGGTAACATGTGCATGATCACTGGAGGTCACAACTTGGGGCGAGTAGGAA
CAGTTATGCATAGAGAGAGACATCCAGGATCATTTGACATCATCCACGTAAAAGATGCGC
TCGGCCACACCTTTGCTACCCGTCTATCGAATGTTTTCATCATAGGCCAGGCCAACAAAC
CAATGGTTTCCCTTCCACGAGGAAAAGGAATCAAACTGACGATCGCTGAAGAGAGAGACC
GTCGGTTGGCAACAAAGTAAATGCCATTGAATTGAGCATTTCAATAAATATTGAAATCGG
ATTTA
| PANTHER |
Ribosomal_S4e (IPR000876) - T[7-265] 3.8E-143 |
| PIRSF |
Ribosomal_S4e (IPR000876) - T[7-247] 3.8E-96 |
| Pfam |
Ribosomal_S4e_N (IPR013843) - T[9-45] 4.1E-22 |
| Hamap |
Ribosomal_S4e (IPR000876) - T[13-244] 35.469 |
| ProSitePatterns |
Ribosomal_S4e_N_CS (IPR018199) - T[14-28] . |
| ProSiteProfiles |
S4_RNA-bd (IPR002942) - T[48-111] 9.298 |
| Pfam |
S4_RNA-bd (IPR002942) - T[52-96] 2.1E-5 |
| CDD |
S4_RNA-bd (IPR002942) - T[68-118] 5.49159E-4 |
| ProDom |
Ribosomal_S4e_central_region (IPR013845) - T[93-187] 1.0E-36 |
| Pfam |
Ribosomal_S4e_central_region (IPR013845) - T[101-175] 4.1E-37 |
| Gene3D |
Ribosomal_S4e_central_sf (IPR038237) - T[128-177] 7.8E-26 |
| Gene3D |
Rib_L2_dom2 (IPR014722) - T[181-251] 6.6E-36 |
| Pfam |
KOW (IPR005824) - T[184-217] 2.5E-5 |
| Pfam |
40S_S4_C (IPR032277) - T[218-265] 8.8E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RS4X_HUMAN | 76.062 % | 429 | 6.7E-154 |
| RS4Y1_HUMAN | 74.517 % | 425 | 2.39E-152 |
| RS4Y2_HUMAN | 72.201 % | 409 | 4.37E-146 |