- Transcript 'KH2012:KH.C4.811.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.L13.14.v1....' >
- Transcript 'KH2012:KH.C7.413.v1....' >
- Transcript 'KH2012:KH.C12.116.v2...'
Transcript Model
Transcript Id
KH2012:KH.C12.116.v2.A.SL7-1
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
KhC12 [1,531,558 / 1,548,232]
Amino acid sequence
Length: 1,213
>KH.C12.116.v2.A.SL7-1
VIKRREIRFSNWKVSEDESNVTMVLNWQKNKENNADSKVDQQKKKLDSYTKKNDIVFIDG
CKGLKMSEKQTLNVDADSQIVIENDKEITPEMAEIAKATVKRSAAESDNSHLPKVLKQED
ILENTQPKTNELLLTVDQAGNANDHDHEKQMLELVDAAAHATSYTEEVVVQEDAKTNTDI
DNSSTGILGDLSNLGSDTTNGPVQIVVEQGDIKGDYLDQEDYQIDTSSVEPEPQQTNTAT
VAAPQGVNPSMMSNLLHTAAAVAASQNAAAATVQVIPGQAAGTIQLVPAADVQKTREMMA
AGLSPQSVNQSGEESGKPSNQPVFTYLVTSQGTLIAAHASDGSELISGSNGTKPKRKNTG
RGRRLSKNSKSIVAKEEVGSEDGHGGGVNQLGGMYVNGRPLPEPIRQRIVNLSHQGVRPC
DISRQLRVSHGCVSKILARYYETGSIRPGVIGGSKPKVATHDVVMRITEYKRENPTMFAW
EIRDRLLADEVCSQETVPSVSSINRIVRSKTSEFMKDNQKLSEQASLPSPLLNMQMIKGD
RKRTNTAPSTSLNLVNQQANGNSLQNVDLGGMQIIASGNDGNSGLAQYVSFAGSEGQSNK
PVEQPTLQGSNSNDQNRIYSLSNLLGITPSQAALLASNPAAFTQAAAVIGATPTSSSNSN
IVEPPKPSPSLPAVLASLPLGQQYELLKTVGGDLVTVQQVEEKSQEQSNSRLISVQPNKA
TNIQPSNQQILVNAQGQIVTQTSMLAPHGSQTRVISPSNVQQGGLYVTANGQVISTAAAQ
NLIVANLDQPVQSSTNSINLNQLSGVDVMTSSVMTSSVRSTPTLTSPSNKTSKSSSITIG
ANQQGLVTLTQQQIQQLAAQGVVIQPAPNHVSYQPVEQQNEKPDSEVVISESDCVTRTSE
ESVVVETVSNEKASEKVSLEQISHTNEVNMTQEQQQLLKMLQSAILVKQEPSEESSNINQ
LLMATQQPGTAQLLSAAAALGAMQPSQTIAASSDTNTNSNNNNQHLVSSNPQVLTAAQLQ
QLTSNLQQQQQHQQQQQGIVQILSAAGQLQHQQITNNQNSNNNNSQLQQQIAVQMLPATS
GSNNNNNNNGGNSNLGRSGTQLQLASGTLTELQPVSSLLNQLRTQPQQAVTFSVANTVAA
LQPPPATALPSLVLPPASVTIATTPSSGIPNTLTQPFTTIYNEAWKMATNVQVTRAQSSH
ESASSPSSGEKKS
Nucleotide sequence
Length: 4,257
>KH2012:KH.C12.116.v2.A.SL7-1
GAGTTATAAAACGCCGTGAAATTCGTTTTAGTAATTGGAAAGTCTCTGAAGATGAGAGCA
ATGTTACTATGGTTTTGAATTGGCAAAAAAATAAGGAAAATAACGCTGATTCAAAAGTAG
ATCAACAAAAGAAAAAGTTAGATTCATACACTAAAAAAAACGATATTGTGTTTATTGATG
GTTGTAAAGGTTTGAAAATGTCTGAAAAACAAACTTTAAACGTAGATGCCGATTCACAGA
TTGTTATTGAAAATGATAAAGAAATTACTCCAGAAATGGCAGAGATAGCAAAGGCCACTG
TTAAACGGAGTGCTGCAGAAAGTGATAACTCGCATTTGCCAAAAGTTCTTAAGCAGGAAG
ATATTTTGGAAAACACTCAACCCAAAACGAATGAGCTTTTGCTTACTGTTGATCAAGCAG
GGAATGCTAATGACCATGATCATGAAAAACAAATGTTGGAACTTGTTGATGCGGCAGCTC
ATGCAACATCCTATACAGAGGAAGTAGTGGTACAAGAAGATGCTAAAACTAACACTGACA
TTGATAATAGCTCCACTGGCATTTTAGGAGATTTATCTAACCTTGGTAGTGATACCACAA
ATGGTCCGGTGCAAATTGTGGTGGAGCAAGGTGATATTAAAGGAGATTACCTGGACCAGG
AGGACTACCAGATTGATACCAGCAGTGTAGAGCCAGAACCACAACAGACCAATACTGCAA
CGGTGGCTGCTCCACAAGGAGTAAACCCTTCTATGATGAGTAATCTTCTCCACACAGCTG
CTGCTGTTGCTGCTTCACAAAATGCAGCAGCAGCTACTGTTCAAGTGATCCCGGGGCAAG
CTGCTGGTACAATACAACTTGTTCCAGCAGCAGATGTTCAAAAAACTCGGGAAATGATGG
CTGCTGGCTTGTCGCCACAAAGTGTTAATCAGTCCGGTGAGGAAAGTGGGAAGCCATCTA
ATCAACCTGTGTTTACCTACTTGGTTACTAGTCAAGGCACACTTATTGCAGCACATGCCA
GTGATGGTAGTGAGTTGATATCCGGTTCAAATGGAACAAAACCTAAAAGAAAAAACACTG
GCAGGGGTCGGAGATTAAGTAAAAATTCCAAGTCCATTGTAGCAAAAGAAGAAGTTGGCA
GTGAAGATGGCCATGGTGGAGGAGTTAATCAACTTGGTGGAATGTATGTCAACGGAAGGC
CTTTACCGGAACCAATAAGGCAACGCATTGTCAATCTATCTCACCAAGGAGTTCGTCCGT
GTGACATTTCTCGTCAGCTACGTGTATCGCATGGCTGTGTCAGCAAGATTTTAGCAAGGT
ATTATGAGACCGGAAGCATTCGTCCTGGGGTTATTGGAGGTAGTAAGCCGAAAGTGGCAA
CACATGATGTGGTGATGCGGATAACGGAGTACAAACGTGAAAATCCTACCATGTTTGCTT
GGGAAATACGTGACAGACTTTTGGCTGATGAAGTATGTTCACAAGAAACTGTACCAAGTG
TTTCATCAATAAACAGAATTGTAAGAAGCAAAACTTCTGAATTTATGAAAGACAATCAGA
AGCTTTCAGAACAAGCGAGTCTGCCTTCTCCATTGTTAAACATGCAGATGATAAAAGGTG
ATAGAAAACGTACAAATACTGCACCAAGCACCTCCCTTAATCTTGTAAACCAACAAGCAA
ACGGCAACTCGTTGCAAAATGTGGACCTTGGTGGAATGCAGATTATTGCTTCTGGCAATG
ATGGCAACTCAGGGCTGGCACAATATGTCTCATTTGCAGGGTCAGAAGGACAAAGCAACA
AACCTGTTGAACAACCTACTTTGCAAGGATCCAACTCAAACGATCAGAATCGCATTTACA
GTCTCAGCAACCTTCTTGGAATTACACCAAGCCAAGCTGCTCTTCTAGCAAGCAACCCTG
CAGCTTTCACACAAGCTGCTGCTGTGATTGGTGCAACCCCAACTTCATCATCCAATTCGA
ACATTGTTGAACCCCCCAAACCATCACCTTCTCTACCAGCTGTACTCGCCAGCTTACCCT
TGGGTCAGCAATATGAGTTGCTCAAAACTGTGGGTGGTGACCTTGTTACCGTGCAACAGG
TGGAAGAGAAAAGTCAGGAGCAGAGTAATTCCCGTCTTATATCAGTCCAGCCAAACAAAG
CAACCAACATACAACCTTCTAATCAGCAGATATTAGTCAACGCTCAAGGACAAATTGTCA
CACAAACCAGTATGCTGGCCCCCCATGGTAGCCAGACACGTGTTATATCGCCATCCAATG
TTCAACAAGGTGGGCTTTATGTGACAGCCAATGGTCAGGTGATTTCAACTGCTGCAGCTC
AAAACTTAATTGTTGCAAACCTTGACCAACCAGTGCAGTCCTCAACAAATTCCATAAATC
TAAACCAACTGAGTGGTGTTGATGTTATGACATCATCAGTGATGACATCATCAGTTCGTT
CGACACCCACCTTAACATCACCCAGCAACAAAACTTCCAAATCTTCCTCCATAACTATAG
GTGCAAACCAGCAAGGGTTAGTAACGCTCACCCAACAGCAAATACAACAGTTGGCAGCAC
AAGGTGTTGTAATTCAACCTGCTCCGAACCATGTTTCATACCAACCAGTTGAGCAACAGA
ACGAGAAGCCAGACAGTGAGGTGGTAATCTCAGAGAGTGATTGTGTTACAAGAACATCTG
AAGAATCTGTCGTTGTGGAAACTGTATCTAATGAAAAAGCTTCAGAGAAAGTTTCACTTG
AGCAAATATCTCACACAAATGAAGTAAATATGACACAAGAACAACAACAGTTACTTAAAA
TGCTACAGAGTGCAATCCTTGTCAAGCAAGAACCAAGTGAGGAGTCGTCCAACATAAACC
AGCTACTCATGGCAACACAACAACCTGGAACTGCCCAGTTATTATCGGCAGCTGCTGCAC
TAGGTGCAATGCAACCCTCACAAACTATTGCAGCTTCATCTGACACAAACACCAACTCGA
ACAACAACAACCAACATCTTGTATCTTCCAACCCTCAAGTTCTTACTGCAGCTCAATTAC
AACAACTTACTTCTAACTTGCAACAACAACAACAACATCAACAGCAACAACAAGGAATTG
TCCAGATTCTGTCAGCTGCTGGCCAACTACAACATCAACAAATAACCAACAACCAGAACA
GCAACAATAACAACAGTCAACTACAACAGCAAATAGCGGTGCAAATGCTTCCAGCAACTA
GCGGCAGTAACAACAACAATAATAACAATGGTGGCAATTCAAATCTTGGAAGGTCTGGTA
CACAACTCCAACTTGCATCGGGAACATTAACTGAGCTTCAACCTGTCAGTTCTCTTCTTA
ACCAACTCCGCACACAACCCCAACAAGCTGTTACCTTTTCTGTTGCAAATACTGTTGCTG
CACTTCAACCACCACCAGCTACAGCACTTCCATCACTTGTTCTGCCACCTGCCAGTGTAA
CTATAGCCACCACCCCATCTAGTGGTATACCCAACACTCTTACACAACCGTTCACAACAA
TATACAATGAAGCATGGAAGATGGCTACCAATGTGCAAGTTACAAGAGCTCAATCATCAC
ATGAGAGTGCTTCCTCTCCTTCAAGTGGTGAAAAAAAGAGCTAAGACACTAAGCTGTTCA
ACATCTAAGTGCCTTTTACCTGATGTAAATACCAGTGGCACATCTATAATACAGGTGTAT
TTATGGAACCAGTTAGGGCAGTCTTCAAAATAACAAAATTTGTTTTGTTTTCTGACATTT
GAAATTTGTTAACTCTGGAGTTTACCACTCCTAATGCCAAAGAAGTCCATCTTGTGGTAC
GAGCCCGTCTTATTTTTAGTTTATAAATCATCATTTCTCCATAAAGAACGTTAGTAAACA
GTTATTTTTTTAAAGAAAACCATCATGCTGCTTGTACAGTTTAGTAAAGATAGTTGATTT
TAAATTTTATTTTAAATCAACAAAGAAAAACATGCCTAACTATCTGCCGTCTTGTTAAAG
TTCTTTAACCTTTCTGTTAAAAATATATAAATTTTTTATTTAAGACCCGCTGCCATGGGG
GTTTTGAGTTTTGCACTACCCATACATGGGGGTCTATTCTTCACCCGCTGCAACTACTAT
GGCCTGTCATTTAGCTTTTGTTTGTTTTTGTAAATCCTGCCATTTTATTTTCCTTGTTCT
GATTCTTGTTTTTTTTTTTGTATTTAGAAATTGTAAAGTACAAACAAAACACTGACA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[377-452] 2.2E-38 - T[453-517] 1.5E-32 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[384-510] 60.013 |
| SMART |
Paired_dom (IPR001523) - T[384-508] 1.3E-88 |
| CDD |
Paired_dom (IPR001523) - T[386-510] 9.5907E-73 |
| Pfam |
Paired_dom (IPR001523) - T[386-508] 2.1E-67 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[387-508] 1.02E-36 |
| PRINTS |
Paired_dom (IPR001523) - T[388-403] 6.4E-39 - T[406-424] 6.4E-39 - T[426-443] 6.4E-39 - T[444-461] 6.4E-39 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[418-434] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 80.916 % | 236 | 8.94E-69 |
| PAX2_HUMAN | 81.25 % | 233 | 2.93E-67 |
| PAX8_HUMAN | 82.031 % | 234 | 1.47E-67 |