- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Clone 'AHC0AAA155YJ08' >
- Clone 'cien157781' >
- Transcript 'KH2012:KH.C7.605.v1....' >
- Transcript 'KH2012:KH.C12.116.v2...'
Transcript Model
Transcript Id
KH2012:KH.C12.116.v2.A.SL6-1
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
KhC12 [1,531,558 / 1,547,993]
Amino acid sequence
Length: 1,134
>KH.C12.116.v2.A.SL6-1
IVIENDKEITPEMAEIAKATVKRSAAESDNSHLPKVLKQEDILENTQPKTNELLLTVDQA
GNANDHDHEKQMLELVDAAAHATSYTEEVVVQEDAKTNTDIDNSSTGILGDLSNLGSDTT
NGPVQIVVEQGDIKGDYLDQEDYQIDTSSVEPEPQQTNTATVAAPQGVNPSMMSNLLHTA
AAVAASQNAAAATVQVIPGQAAGTIQLVPAADVQKTREMMAAGLSPQSVNQSGEESGKPS
NQPVFTYLVTSQGTLIAAHASDGSELISGSNGTKPKRKNTGRGRRLSKNSKSIVAKEEVG
SEDGHGGGVNQLGGMYVNGRPLPEPIRQRIVNLSHQGVRPCDISRQLRVSHGCVSKILAR
YYETGSIRPGVIGGSKPKVATHDVVMRITEYKRENPTMFAWEIRDRLLADEVCSQETVPS
VSSINRIVRSKTSEFMKDNQKLSEQASLPSPLLNMQMIKGDRKRTNTAPSTSLNLVNQQA
NGNSLQNVDLGGMQIIASGNDGNSGLAQYVSFAGSEGQSNKPVEQPTLQGSNSNDQNRIY
SLSNLLGITPSQAALLASNPAAFTQAAAVIGATPTSSSNSNIVEPPKPSPSLPAVLASLP
LGQQYELLKTVGGDLVTVQQVEEKSQEQSNSRLISVQPNKATNIQPSNQQILVNAQGQIV
TQTSMLAPHGSQTRVISPSNVQQGGLYVTANGQVISTAAAQNLIVANLDQPVQSSTNSIN
LNQLSGVDVMTSSVMTSSVRSTPTLTSPSNKTSKSSSITIGANQQGLVTLTQQQIQQLAA
QGVVIQPAPNHVSYQPVEQQNEKPDSEVVISESDCVTRTSEESVVVETVSNEKASEKVSL
EQISHTNEVNMTQEQQQLLKMLQSAILVKQEPSEESSNINQLLMATQQPGTAQLLSAAAA
LGAMQPSQTIAASSDTNTNSNNNNQHLVSSNPQVLTAAQLQQLTSNLQQQQQHQQQQQGI
VQILSAAGQLQHQQITNNQNSNNNNSQLQQQIAVQMLPATSGSNNNNNNNGGNSNLGRSG
TQLQLASGTLTELQPVSSLLNQLRTQPQQAVTFSVANTVAALQPPPATALPSLVLPPASV
TIATTPSSGIPNTLTQPFTTIYNEAWKMATNVQVTRAQSSHESASSPSSGEKKS
Nucleotide sequence
Length: 4,018
>KH2012:KH.C12.116.v2.A.SL6-1
ATTGTTATTGAAAATGATAAAGAAATTACTCCAGAAATGGCAGAGATAGCAAAGGCCACT
GTTAAACGGAGTGCTGCAGAAAGTGATAACTCGCATTTGCCAAAAGTTCTTAAGCAGGAA
GATATTTTGGAAAACACTCAACCCAAAACGAATGAGCTTTTGCTTACTGTTGATCAAGCA
GGGAATGCTAATGACCATGATCATGAAAAACAAATGTTGGAACTTGTTGATGCGGCAGCT
CATGCAACATCCTATACAGAGGAAGTAGTGGTACAAGAAGATGCTAAAACTAACACTGAC
ATTGATAATAGCTCCACTGGCATTTTAGGAGATTTATCTAACCTTGGTAGTGATACCACA
AATGGTCCGGTGCAAATTGTGGTGGAGCAAGGTGATATTAAAGGAGATTACCTGGACCAG
GAGGACTACCAGATTGATACCAGCAGTGTAGAGCCAGAACCACAACAGACCAATACTGCA
ACGGTGGCTGCTCCACAAGGAGTAAACCCTTCTATGATGAGTAATCTTCTCCACACAGCT
GCTGCTGTTGCTGCTTCACAAAATGCAGCAGCAGCTACTGTTCAAGTGATCCCGGGGCAA
GCTGCTGGTACAATACAACTTGTTCCAGCAGCAGATGTTCAAAAAACTCGGGAAATGATG
GCTGCTGGCTTGTCGCCACAAAGTGTTAATCAGTCCGGTGAGGAAAGTGGGAAGCCATCT
AATCAACCTGTGTTTACCTACTTGGTTACTAGTCAAGGCACACTTATTGCAGCACATGCC
AGTGATGGTAGTGAGTTGATATCCGGTTCAAATGGAACAAAACCTAAAAGAAAAAACACT
GGCAGGGGTCGGAGATTAAGTAAAAATTCCAAGTCCATTGTAGCAAAAGAAGAAGTTGGC
AGTGAAGATGGCCATGGTGGAGGAGTTAATCAACTTGGTGGAATGTATGTCAACGGAAGG
CCTTTACCGGAACCAATAAGGCAACGCATTGTCAATCTATCTCACCAAGGAGTTCGTCCG
TGTGACATTTCTCGTCAGCTACGTGTATCGCATGGCTGTGTCAGCAAGATTTTAGCAAGG
TATTATGAGACCGGAAGCATTCGTCCTGGGGTTATTGGAGGTAGTAAGCCGAAAGTGGCA
ACACATGATGTGGTGATGCGGATAACGGAGTACAAACGTGAAAATCCTACCATGTTTGCT
TGGGAAATACGTGACAGACTTTTGGCTGATGAAGTATGTTCACAAGAAACTGTACCAAGT
GTTTCATCAATAAACAGAATTGTAAGAAGCAAAACTTCTGAATTTATGAAAGACAATCAG
AAGCTTTCAGAACAAGCGAGTCTGCCTTCTCCATTGTTAAACATGCAGATGATAAAAGGT
GATAGAAAACGTACAAATACTGCACCAAGCACCTCCCTTAATCTTGTAAACCAACAAGCA
AACGGCAACTCGTTGCAAAATGTGGACCTTGGTGGAATGCAGATTATTGCTTCTGGCAAT
GATGGCAACTCAGGGCTGGCACAATATGTCTCATTTGCAGGGTCAGAAGGACAAAGCAAC
AAACCTGTTGAACAACCTACTTTGCAAGGATCCAACTCAAACGATCAGAATCGCATTTAC
AGTCTCAGCAACCTTCTTGGAATTACACCAAGCCAAGCTGCTCTTCTAGCAAGCAACCCT
GCAGCTTTCACACAAGCTGCTGCTGTGATTGGTGCAACCCCAACTTCATCATCCAATTCG
AACATTGTTGAACCCCCCAAACCATCACCTTCTCTACCAGCTGTACTCGCCAGCTTACCC
TTGGGTCAGCAATATGAGTTGCTCAAAACTGTGGGTGGTGACCTTGTTACCGTGCAACAG
GTGGAAGAGAAAAGTCAGGAGCAGAGTAATTCCCGTCTTATATCAGTCCAGCCAAACAAA
GCAACCAACATACAACCTTCTAATCAGCAGATATTAGTCAACGCTCAAGGACAAATTGTC
ACACAAACCAGTATGCTGGCCCCCCATGGTAGCCAGACACGTGTTATATCGCCATCCAAT
GTTCAACAAGGTGGGCTTTATGTGACAGCCAATGGTCAGGTGATTTCAACTGCTGCAGCT
CAAAACTTAATTGTTGCAAACCTTGACCAACCAGTGCAGTCCTCAACAAATTCCATAAAT
CTAAACCAACTGAGTGGTGTTGATGTTATGACATCATCAGTGATGACATCATCAGTTCGT
TCGACACCCACCTTAACATCACCCAGCAACAAAACTTCCAAATCTTCCTCCATAACTATA
GGTGCAAACCAGCAAGGGTTAGTAACGCTCACCCAACAGCAAATACAACAGTTGGCAGCA
CAAGGTGTTGTAATTCAACCTGCTCCGAACCATGTTTCATACCAACCAGTTGAGCAACAG
AACGAGAAGCCAGACAGTGAGGTGGTAATCTCAGAGAGTGATTGTGTTACAAGAACATCT
GAAGAATCTGTCGTTGTGGAAACTGTATCTAATGAAAAAGCTTCAGAGAAAGTTTCACTT
GAGCAAATATCTCACACAAATGAAGTAAATATGACACAAGAACAACAACAGTTACTTAAA
ATGCTACAGAGTGCAATCCTTGTCAAGCAAGAACCAAGTGAGGAGTCGTCCAACATAAAC
CAGCTACTCATGGCAACACAACAACCTGGAACTGCCCAGTTATTATCGGCAGCTGCTGCA
CTAGGTGCAATGCAACCCTCACAAACTATTGCAGCTTCATCTGACACAAACACCAACTCG
AACAACAACAACCAACATCTTGTATCTTCCAACCCTCAAGTTCTTACTGCAGCTCAATTA
CAACAACTTACTTCTAACTTGCAACAACAACAACAACATCAACAGCAACAACAAGGAATT
GTCCAGATTCTGTCAGCTGCTGGCCAACTACAACATCAACAAATAACCAACAACCAGAAC
AGCAACAATAACAACAGTCAACTACAACAGCAAATAGCGGTGCAAATGCTTCCAGCAACT
AGCGGCAGTAACAACAACAATAATAACAATGGTGGCAATTCAAATCTTGGAAGGTCTGGT
ACACAACTCCAACTTGCATCGGGAACATTAACTGAGCTTCAACCTGTCAGTTCTCTTCTT
AACCAACTCCGCACACAACCCCAACAAGCTGTTACCTTTTCTGTTGCAAATACTGTTGCT
GCACTTCAACCACCACCAGCTACAGCACTTCCATCACTTGTTCTGCCACCTGCCAGTGTA
ACTATAGCCACCACCCCATCTAGTGGTATACCCAACACTCTTACACAACCGTTCACAACA
ATATACAATGAAGCATGGAAGATGGCTACCAATGTGCAAGTTACAAGAGCTCAATCATCA
CATGAGAGTGCTTCCTCTCCTTCAAGTGGTGAAAAAAAGAGCTAAGACACTAAGCTGTTC
AACATCTAAGTGCCTTTTACCTGATGTAAATACCAGTGGCACATCTATAATACAGGTGTA
TTTATGGAACCAGTTAGGGCAGTCTTCAAAATAACAAAATTTGTTTTGTTTTCTGACATT
TGAAATTTGTTAACTCTGGAGTTTACCACTCCTAATGCCAAAGAAGTCCATCTTGTGGTA
CGAGCCCGTCTTATTTTTAGTTTATAAATCATCATTTCTCCATAAAGAACGTTAGTAAAC
AGTTATTTTTTTAAAGAAAACCATCATGCTGCTTGTACAGTTTAGTAAAGATAGTTGATT
TTAAATTTTATTTTAAATCAACAAAGAAAAACATGCCTAACTATCTGCCGTCTTGTTAAA
GTTCTTTAACCTTTCTGTTAAAAATATATAAATTTTTTATTTAAGACCCGCTGCCATGGG
GGTTTTGAGTTTTGCACTACCCATACATGGGGGTCTATTCTTCACCCGCTGCAACTACTA
TGGCCTGTCATTTAGCTTTTGTTTGTTTTTGTAAATCCTGCCATTTTATTTTCCTTGTTC
TGATTCTTGTTTTTTTTTTTGTATTTAGAAATTGTAAAGTACAAACAAAACACTGACA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[298-373] 2.0E-38 - T[374-438] 1.4E-32 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[305-431] 60.013 |
| SMART |
Paired_dom (IPR001523) - T[305-429] 1.3E-88 |
| CDD |
Paired_dom (IPR001523) - T[307-431] 1.14238E-72 |
| Pfam |
Paired_dom (IPR001523) - T[307-429] 1.9E-67 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[308-429] 9.26E-37 |
| PRINTS |
Paired_dom (IPR001523) - T[309-324] 5.0E-39 - T[327-345] 5.0E-39 - T[347-364] 5.0E-39 - T[365-382] 5.0E-39 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[339-355] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 80.916 % | 236 | 4.55E-69 |
| PAX2_HUMAN | 81.25 % | 233 | 1.07E-67 |
| PAX8_HUMAN | 82.031 % | 234 | 8.77E-68 |