- Transcript 'KH2012:KH.C12.116.v2...' >
- Transcript 'KH2012:KH.C10.243.v1...' >
- Transcript 'KH2012:KH.C8.272.v2....' >
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- Transcript 'KH2012:KH.C12.116.v2...'
Transcript Model
Transcript Id
KH2012:KH.C12.116.v2.A.SL5-1
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
KhC12 [1,531,558 / 1,548,313]
Amino acid sequence
Length: 1,240
>KH.C12.116.v2.A.SL5-1
TETGCEEAFDFTSESIISLDAVQALSGVIKRREIRFSNWKVSEDESNVTMVLNWQKNKEN
NADSKVDQQKKKLDSYTKKNDIVFIDGCKGLKMSEKQTLNVDADSQIVIENDKEITPEMA
EIAKATVKRSAAESDNSHLPKVLKQEDILENTQPKTNELLLTVDQAGNANDHDHEKQMLE
LVDAAAHATSYTEEVVVQEDAKTNTDIDNSSTGILGDLSNLGSDTTNGPVQIVVEQGDIK
GDYLDQEDYQIDTSSVEPEPQQTNTATVAAPQGVNPSMMSNLLHTAAAVAASQNAAAATV
QVIPGQAAGTIQLVPAADVQKTREMMAAGLSPQSVNQSGEESGKPSNQPVFTYLVTSQGT
LIAAHASDGSELISGSNGTKPKRKNTGRGRRLSKNSKSIVAKEEVGSEDGHGGGVNQLGG
MYVNGRPLPEPIRQRIVNLSHQGVRPCDISRQLRVSHGCVSKILARYYETGSIRPGVIGG
SKPKVATHDVVMRITEYKRENPTMFAWEIRDRLLADEVCSQETVPSVSSINRIVRSKTSE
FMKDNQKLSEQASLPSPLLNMQMIKGDRKRTNTAPSTSLNLVNQQANGNSLQNVDLGGMQ
IIASGNDGNSGLAQYVSFAGSEGQSNKPVEQPTLQGSNSNDQNRIYSLSNLLGITPSQAA
LLASNPAAFTQAAAVIGATPTSSSNSNIVEPPKPSPSLPAVLASLPLGQQYELLKTVGGD
LVTVQQVEEKSQEQSNSRLISVQPNKATNIQPSNQQILVNAQGQIVTQTSMLAPHGSQTR
VISPSNVQQGGLYVTANGQVISTAAAQNLIVANLDQPVQSSTNSINLNQLSGVDVMTSSV
MTSSVRSTPTLTSPSNKTSKSSSITIGANQQGLVTLTQQQIQQLAAQGVVIQPAPNHVSY
QPVEQQNEKPDSEVVISESDCVTRTSEESVVVETVSNEKASEKVSLEQISHTNEVNMTQE
QQQLLKMLQSAILVKQEPSEESSNINQLLMATQQPGTAQLLSAAAALGAMQPSQTIAASS
DTNTNSNNNNQHLVSSNPQVLTAAQLQQLTSNLQQQQQHQQQQQGIVQILSAAGQLQHQQ
ITNNQNSNNNNSQLQQQIAVQMLPATSGSNNNNNNNGGNSNLGRSGTQLQLASGTLTELQ
PVSSLLNQLRTQPQQAVTFSVANTVAALQPPPATALPSLVLPPASVTIATTPSSGIPNTL
TQPFTTIYNEAWKMATNVQVTRAQSSHESASSPSSGEKKS
Nucleotide sequence
Length: 4,338
>KH2012:KH.C12.116.v2.A.SL5-1
AAACAGAAACCGGGTGTGAGGAAGCCTTTGATTTCACCTCTGAATCTATTATTTCACTTG
ACGCTGTGCAAGCACTTTCAGGAGTTATAAAACGCCGTGAAATTCGTTTTAGTAATTGGA
AAGTCTCTGAAGATGAGAGCAATGTTACTATGGTTTTGAATTGGCAAAAAAATAAGGAAA
ATAACGCTGATTCAAAAGTAGATCAACAAAAGAAAAAGTTAGATTCATACACTAAAAAAA
ACGATATTGTGTTTATTGATGGTTGTAAAGGTTTGAAAATGTCTGAAAAACAAACTTTAA
ACGTAGATGCCGATTCACAGATTGTTATTGAAAATGATAAAGAAATTACTCCAGAAATGG
CAGAGATAGCAAAGGCCACTGTTAAACGGAGTGCTGCAGAAAGTGATAACTCGCATTTGC
CAAAAGTTCTTAAGCAGGAAGATATTTTGGAAAACACTCAACCCAAAACGAATGAGCTTT
TGCTTACTGTTGATCAAGCAGGGAATGCTAATGACCATGATCATGAAAAACAAATGTTGG
AACTTGTTGATGCGGCAGCTCATGCAACATCCTATACAGAGGAAGTAGTGGTACAAGAAG
ATGCTAAAACTAACACTGACATTGATAATAGCTCCACTGGCATTTTAGGAGATTTATCTA
ACCTTGGTAGTGATACCACAAATGGTCCGGTGCAAATTGTGGTGGAGCAAGGTGATATTA
AAGGAGATTACCTGGACCAGGAGGACTACCAGATTGATACCAGCAGTGTAGAGCCAGAAC
CACAACAGACCAATACTGCAACGGTGGCTGCTCCACAAGGAGTAAACCCTTCTATGATGA
GTAATCTTCTCCACACAGCTGCTGCTGTTGCTGCTTCACAAAATGCAGCAGCAGCTACTG
TTCAAGTGATCCCGGGGCAAGCTGCTGGTACAATACAACTTGTTCCAGCAGCAGATGTTC
AAAAAACTCGGGAAATGATGGCTGCTGGCTTGTCGCCACAAAGTGTTAATCAGTCCGGTG
AGGAAAGTGGGAAGCCATCTAATCAACCTGTGTTTACCTACTTGGTTACTAGTCAAGGCA
CACTTATTGCAGCACATGCCAGTGATGGTAGTGAGTTGATATCCGGTTCAAATGGAACAA
AACCTAAAAGAAAAAACACTGGCAGGGGTCGGAGATTAAGTAAAAATTCCAAGTCCATTG
TAGCAAAAGAAGAAGTTGGCAGTGAAGATGGCCATGGTGGAGGAGTTAATCAACTTGGTG
GAATGTATGTCAACGGAAGGCCTTTACCGGAACCAATAAGGCAACGCATTGTCAATCTAT
CTCACCAAGGAGTTCGTCCGTGTGACATTTCTCGTCAGCTACGTGTATCGCATGGCTGTG
TCAGCAAGATTTTAGCAAGGTATTATGAGACCGGAAGCATTCGTCCTGGGGTTATTGGAG
GTAGTAAGCCGAAAGTGGCAACACATGATGTGGTGATGCGGATAACGGAGTACAAACGTG
AAAATCCTACCATGTTTGCTTGGGAAATACGTGACAGACTTTTGGCTGATGAAGTATGTT
CACAAGAAACTGTACCAAGTGTTTCATCAATAAACAGAATTGTAAGAAGCAAAACTTCTG
AATTTATGAAAGACAATCAGAAGCTTTCAGAACAAGCGAGTCTGCCTTCTCCATTGTTAA
ACATGCAGATGATAAAAGGTGATAGAAAACGTACAAATACTGCACCAAGCACCTCCCTTA
ATCTTGTAAACCAACAAGCAAACGGCAACTCGTTGCAAAATGTGGACCTTGGTGGAATGC
AGATTATTGCTTCTGGCAATGATGGCAACTCAGGGCTGGCACAATATGTCTCATTTGCAG
GGTCAGAAGGACAAAGCAACAAACCTGTTGAACAACCTACTTTGCAAGGATCCAACTCAA
ACGATCAGAATCGCATTTACAGTCTCAGCAACCTTCTTGGAATTACACCAAGCCAAGCTG
CTCTTCTAGCAAGCAACCCTGCAGCTTTCACACAAGCTGCTGCTGTGATTGGTGCAACCC
CAACTTCATCATCCAATTCGAACATTGTTGAACCCCCCAAACCATCACCTTCTCTACCAG
CTGTACTCGCCAGCTTACCCTTGGGTCAGCAATATGAGTTGCTCAAAACTGTGGGTGGTG
ACCTTGTTACCGTGCAACAGGTGGAAGAGAAAAGTCAGGAGCAGAGTAATTCCCGTCTTA
TATCAGTCCAGCCAAACAAAGCAACCAACATACAACCTTCTAATCAGCAGATATTAGTCA
ACGCTCAAGGACAAATTGTCACACAAACCAGTATGCTGGCCCCCCATGGTAGCCAGACAC
GTGTTATATCGCCATCCAATGTTCAACAAGGTGGGCTTTATGTGACAGCCAATGGTCAGG
TGATTTCAACTGCTGCAGCTCAAAACTTAATTGTTGCAAACCTTGACCAACCAGTGCAGT
CCTCAACAAATTCCATAAATCTAAACCAACTGAGTGGTGTTGATGTTATGACATCATCAG
TGATGACATCATCAGTTCGTTCGACACCCACCTTAACATCACCCAGCAACAAAACTTCCA
AATCTTCCTCCATAACTATAGGTGCAAACCAGCAAGGGTTAGTAACGCTCACCCAACAGC
AAATACAACAGTTGGCAGCACAAGGTGTTGTAATTCAACCTGCTCCGAACCATGTTTCAT
ACCAACCAGTTGAGCAACAGAACGAGAAGCCAGACAGTGAGGTGGTAATCTCAGAGAGTG
ATTGTGTTACAAGAACATCTGAAGAATCTGTCGTTGTGGAAACTGTATCTAATGAAAAAG
CTTCAGAGAAAGTTTCACTTGAGCAAATATCTCACACAAATGAAGTAAATATGACACAAG
AACAACAACAGTTACTTAAAATGCTACAGAGTGCAATCCTTGTCAAGCAAGAACCAAGTG
AGGAGTCGTCCAACATAAACCAGCTACTCATGGCAACACAACAACCTGGAACTGCCCAGT
TATTATCGGCAGCTGCTGCACTAGGTGCAATGCAACCCTCACAAACTATTGCAGCTTCAT
CTGACACAAACACCAACTCGAACAACAACAACCAACATCTTGTATCTTCCAACCCTCAAG
TTCTTACTGCAGCTCAATTACAACAACTTACTTCTAACTTGCAACAACAACAACAACATC
AACAGCAACAACAAGGAATTGTCCAGATTCTGTCAGCTGCTGGCCAACTACAACATCAAC
AAATAACCAACAACCAGAACAGCAACAATAACAACAGTCAACTACAACAGCAAATAGCGG
TGCAAATGCTTCCAGCAACTAGCGGCAGTAACAACAACAATAATAACAATGGTGGCAATT
CAAATCTTGGAAGGTCTGGTACACAACTCCAACTTGCATCGGGAACATTAACTGAGCTTC
AACCTGTCAGTTCTCTTCTTAACCAACTCCGCACACAACCCCAACAAGCTGTTACCTTTT
CTGTTGCAAATACTGTTGCTGCACTTCAACCACCACCAGCTACAGCACTTCCATCACTTG
TTCTGCCACCTGCCAGTGTAACTATAGCCACCACCCCATCTAGTGGTATACCCAACACTC
TTACACAACCGTTCACAACAATATACAATGAAGCATGGAAGATGGCTACCAATGTGCAAG
TTACAAGAGCTCAATCATCACATGAGAGTGCTTCCTCTCCTTCAAGTGGTGAAAAAAAGA
GCTAAGACACTAAGCTGTTCAACATCTAAGTGCCTTTTACCTGATGTAAATACCAGTGGC
ACATCTATAATACAGGTGTATTTATGGAACCAGTTAGGGCAGTCTTCAAAATAACAAAAT
TTGTTTTGTTTTCTGACATTTGAAATTTGTTAACTCTGGAGTTTACCACTCCTAATGCCA
AAGAAGTCCATCTTGTGGTACGAGCCCGTCTTATTTTTAGTTTATAAATCATCATTTCTC
CATAAAGAACGTTAGTAAACAGTTATTTTTTTAAAGAAAACCATCATGCTGCTTGTACAG
TTTAGTAAAGATAGTTGATTTTAAATTTTATTTTAAATCAACAAAGAAAAACATGCCTAA
CTATCTGCCGTCTTGTTAAAGTTCTTTAACCTTTCTGTTAAAAATATATAAATTTTTTAT
TTAAGACCCGCTGCCATGGGGGTTTTGAGTTTTGCACTACCCATACATGGGGGTCTATTC
TTCACCCGCTGCAACTACTATGGCCTGTCATTTAGCTTTTGTTTGTTTTTGTAAATCCTG
CCATTTTATTTTCCTTGTTCTGATTCTTGTTTTTTTTTTTGTATTTAGAAATTGTAAAGT
ACAAACAAAACACTGACA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[404-479] 2.3E-38 - T[480-544] 1.5E-32 |
| SMART |
Paired_dom (IPR001523) - T[411-535] 1.3E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[411-537] 60.013 |
| Pfam |
Paired_dom (IPR001523) - T[413-535] 2.2E-67 |
| CDD |
Paired_dom (IPR001523) - T[413-537] 7.03145E-73 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[414-535] 1.05E-36 |
| PRINTS |
Paired_dom (IPR001523) - T[415-430] 7.0E-39 - T[433-451] 7.0E-39 - T[453-470] 7.0E-39 - T[471-488] 7.0E-39 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[445-461] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 80.916 % | 236 | 9.74E-69 |
| PAX2_HUMAN | 81.25 % | 233 | 2.79E-67 |
| PAX8_HUMAN | 82.031 % | 234 | 1.81E-67 |