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- Transcript 'KH2012:KH.C12.116.v2...'
Transcript Model
Transcript Id
KH2012:KH.C12.116.v2.A.SL2-1
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
KhC12 [1,531,558 / 1,548,043]
Amino acid sequence
Length: 1,150
>KH.C12.116.v2.A.SL2-1
LKMSEKQTLNVDADSQIVIENDKEITPEMAEIAKATVKRSAAESDNSHLPKVLKQEDILE
NTQPKTNELLLTVDQAGNANDHDHEKQMLELVDAAAHATSYTEEVVVQEDAKTNTDIDNS
STGILGDLSNLGSDTTNGPVQIVVEQGDIKGDYLDQEDYQIDTSSVEPEPQQTNTATVAA
PQGVNPSMMSNLLHTAAAVAASQNAAAATVQVIPGQAAGTIQLVPAADVQKTREMMAAGL
SPQSVNQSGEESGKPSNQPVFTYLVTSQGTLIAAHASDGSELISGSNGTKPKRKNTGRGR
RLSKNSKSIVAKEEVGSEDGHGGGVNQLGGMYVNGRPLPEPIRQRIVNLSHQGVRPCDIS
RQLRVSHGCVSKILARYYETGSIRPGVIGGSKPKVATHDVVMRITEYKRENPTMFAWEIR
DRLLADEVCSQETVPSVSSINRIVRSKTSEFMKDNQKLSEQASLPSPLLNMQMIKGDRKR
TNTAPSTSLNLVNQQANGNSLQNVDLGGMQIIASGNDGNSGLAQYVSFAGSEGQSNKPVE
QPTLQGSNSNDQNRIYSLSNLLGITPSQAALLASNPAAFTQAAAVIGATPTSSSNSNIVE
PPKPSPSLPAVLASLPLGQQYELLKTVGGDLVTVQQVEEKSQEQSNSRLISVQPNKATNI
QPSNQQILVNAQGQIVTQTSMLAPHGSQTRVISPSNVQQGGLYVTANGQVISTAAAQNLI
VANLDQPVQSSTNSINLNQLSGVDVMTSSVMTSSVRSTPTLTSPSNKTSKSSSITIGANQ
QGLVTLTQQQIQQLAAQGVVIQPAPNHVSYQPVEQQNEKPDSEVVISESDCVTRTSEESV
VVETVSNEKASEKVSLEQISHTNEVNMTQEQQQLLKMLQSAILVKQEPSEESSNINQLLM
ATQQPGTAQLLSAAAALGAMQPSQTIAASSDTNTNSNNNNQHLVSSNPQVLTAAQLQQLT
SNLQQQQQHQQQQQGIVQILSAAGQLQHQQITNNQNSNNNNSQLQQQIAVQMLPATSGSN
NNNNNNGGNSNLGRSGTQLQLASGTLTELQPVSSLLNQLRTQPQQAVTFSVANTVAALQP
PPATALPSLVLPPASVTIATTPSSGIPNTLTQPFTTIYNEAWKMATNVQVTRAQSSHESA
SSPSSGEKKS
Nucleotide sequence
Length: 4,068
>KH2012:KH.C12.116.v2.A.SL2-1
GTTTGAAAATGTCTGAAAAACAAACTTTAAACGTAGATGCCGATTCACAGATTGTTATTG
AAAATGATAAAGAAATTACTCCAGAAATGGCAGAGATAGCAAAGGCCACTGTTAAACGGA
GTGCTGCAGAAAGTGATAACTCGCATTTGCCAAAAGTTCTTAAGCAGGAAGATATTTTGG
AAAACACTCAACCCAAAACGAATGAGCTTTTGCTTACTGTTGATCAAGCAGGGAATGCTA
ATGACCATGATCATGAAAAACAAATGTTGGAACTTGTTGATGCGGCAGCTCATGCAACAT
CCTATACAGAGGAAGTAGTGGTACAAGAAGATGCTAAAACTAACACTGACATTGATAATA
GCTCCACTGGCATTTTAGGAGATTTATCTAACCTTGGTAGTGATACCACAAATGGTCCGG
TGCAAATTGTGGTGGAGCAAGGTGATATTAAAGGAGATTACCTGGACCAGGAGGACTACC
AGATTGATACCAGCAGTGTAGAGCCAGAACCACAACAGACCAATACTGCAACGGTGGCTG
CTCCACAAGGAGTAAACCCTTCTATGATGAGTAATCTTCTCCACACAGCTGCTGCTGTTG
CTGCTTCACAAAATGCAGCAGCAGCTACTGTTCAAGTGATCCCGGGGCAAGCTGCTGGTA
CAATACAACTTGTTCCAGCAGCAGATGTTCAAAAAACTCGGGAAATGATGGCTGCTGGCT
TGTCGCCACAAAGTGTTAATCAGTCCGGTGAGGAAAGTGGGAAGCCATCTAATCAACCTG
TGTTTACCTACTTGGTTACTAGTCAAGGCACACTTATTGCAGCACATGCCAGTGATGGTA
GTGAGTTGATATCCGGTTCAAATGGAACAAAACCTAAAAGAAAAAACACTGGCAGGGGTC
GGAGATTAAGTAAAAATTCCAAGTCCATTGTAGCAAAAGAAGAAGTTGGCAGTGAAGATG
GCCATGGTGGAGGAGTTAATCAACTTGGTGGAATGTATGTCAACGGAAGGCCTTTACCGG
AACCAATAAGGCAACGCATTGTCAATCTATCTCACCAAGGAGTTCGTCCGTGTGACATTT
CTCGTCAGCTACGTGTATCGCATGGCTGTGTCAGCAAGATTTTAGCAAGGTATTATGAGA
CCGGAAGCATTCGTCCTGGGGTTATTGGAGGTAGTAAGCCGAAAGTGGCAACACATGATG
TGGTGATGCGGATAACGGAGTACAAACGTGAAAATCCTACCATGTTTGCTTGGGAAATAC
GTGACAGACTTTTGGCTGATGAAGTATGTTCACAAGAAACTGTACCAAGTGTTTCATCAA
TAAACAGAATTGTAAGAAGCAAAACTTCTGAATTTATGAAAGACAATCAGAAGCTTTCAG
AACAAGCGAGTCTGCCTTCTCCATTGTTAAACATGCAGATGATAAAAGGTGATAGAAAAC
GTACAAATACTGCACCAAGCACCTCCCTTAATCTTGTAAACCAACAAGCAAACGGCAACT
CGTTGCAAAATGTGGACCTTGGTGGAATGCAGATTATTGCTTCTGGCAATGATGGCAACT
CAGGGCTGGCACAATATGTCTCATTTGCAGGGTCAGAAGGACAAAGCAACAAACCTGTTG
AACAACCTACTTTGCAAGGATCCAACTCAAACGATCAGAATCGCATTTACAGTCTCAGCA
ACCTTCTTGGAATTACACCAAGCCAAGCTGCTCTTCTAGCAAGCAACCCTGCAGCTTTCA
CACAAGCTGCTGCTGTGATTGGTGCAACCCCAACTTCATCATCCAATTCGAACATTGTTG
AACCCCCCAAACCATCACCTTCTCTACCAGCTGTACTCGCCAGCTTACCCTTGGGTCAGC
AATATGAGTTGCTCAAAACTGTGGGTGGTGACCTTGTTACCGTGCAACAGGTGGAAGAGA
AAAGTCAGGAGCAGAGTAATTCCCGTCTTATATCAGTCCAGCCAAACAAAGCAACCAACA
TACAACCTTCTAATCAGCAGATATTAGTCAACGCTCAAGGACAAATTGTCACACAAACCA
GTATGCTGGCCCCCCATGGTAGCCAGACACGTGTTATATCGCCATCCAATGTTCAACAAG
GTGGGCTTTATGTGACAGCCAATGGTCAGGTGATTTCAACTGCTGCAGCTCAAAACTTAA
TTGTTGCAAACCTTGACCAACCAGTGCAGTCCTCAACAAATTCCATAAATCTAAACCAAC
TGAGTGGTGTTGATGTTATGACATCATCAGTGATGACATCATCAGTTCGTTCGACACCCA
CCTTAACATCACCCAGCAACAAAACTTCCAAATCTTCCTCCATAACTATAGGTGCAAACC
AGCAAGGGTTAGTAACGCTCACCCAACAGCAAATACAACAGTTGGCAGCACAAGGTGTTG
TAATTCAACCTGCTCCGAACCATGTTTCATACCAACCAGTTGAGCAACAGAACGAGAAGC
CAGACAGTGAGGTGGTAATCTCAGAGAGTGATTGTGTTACAAGAACATCTGAAGAATCTG
TCGTTGTGGAAACTGTATCTAATGAAAAAGCTTCAGAGAAAGTTTCACTTGAGCAAATAT
CTCACACAAATGAAGTAAATATGACACAAGAACAACAACAGTTACTTAAAATGCTACAGA
GTGCAATCCTTGTCAAGCAAGAACCAAGTGAGGAGTCGTCCAACATAAACCAGCTACTCA
TGGCAACACAACAACCTGGAACTGCCCAGTTATTATCGGCAGCTGCTGCACTAGGTGCAA
TGCAACCCTCACAAACTATTGCAGCTTCATCTGACACAAACACCAACTCGAACAACAACA
ACCAACATCTTGTATCTTCCAACCCTCAAGTTCTTACTGCAGCTCAATTACAACAACTTA
CTTCTAACTTGCAACAACAACAACAACATCAACAGCAACAACAAGGAATTGTCCAGATTC
TGTCAGCTGCTGGCCAACTACAACATCAACAAATAACCAACAACCAGAACAGCAACAATA
ACAACAGTCAACTACAACAGCAAATAGCGGTGCAAATGCTTCCAGCAACTAGCGGCAGTA
ACAACAACAATAATAACAATGGTGGCAATTCAAATCTTGGAAGGTCTGGTACACAACTCC
AACTTGCATCGGGAACATTAACTGAGCTTCAACCTGTCAGTTCTCTTCTTAACCAACTCC
GCACACAACCCCAACAAGCTGTTACCTTTTCTGTTGCAAATACTGTTGCTGCACTTCAAC
CACCACCAGCTACAGCACTTCCATCACTTGTTCTGCCACCTGCCAGTGTAACTATAGCCA
CCACCCCATCTAGTGGTATACCCAACACTCTTACACAACCGTTCACAACAATATACAATG
AAGCATGGAAGATGGCTACCAATGTGCAAGTTACAAGAGCTCAATCATCACATGAGAGTG
CTTCCTCTCCTTCAAGTGGTGAAAAAAAGAGCTAAGACACTAAGCTGTTCAACATCTAAG
TGCCTTTTACCTGATGTAAATACCAGTGGCACATCTATAATACAGGTGTATTTATGGAAC
CAGTTAGGGCAGTCTTCAAAATAACAAAATTTGTTTTGTTTTCTGACATTTGAAATTTGT
TAACTCTGGAGTTTACCACTCCTAATGCCAAAGAAGTCCATCTTGTGGTACGAGCCCGTC
TTATTTTTAGTTTATAAATCATCATTTCTCCATAAAGAACGTTAGTAAACAGTTATTTTT
TTAAAGAAAACCATCATGCTGCTTGTACAGTTTAGTAAAGATAGTTGATTTTAAATTTTA
TTTTAAATCAACAAAGAAAAACATGCCTAACTATCTGCCGTCTTGTTAAAGTTCTTTAAC
CTTTCTGTTAAAAATATATAAATTTTTTATTTAAGACCCGCTGCCATGGGGGTTTTGAGT
TTTGCACTACCCATACATGGGGGTCTATTCTTCACCCGCTGCAACTACTATGGCCTGTCA
TTTAGCTTTTGTTTGTTTTTGTAAATCCTGCCATTTTATTTTCCTTGTTCTGATTCTTGT
TTTTTTTTTTGTATTTAGAAATTGTAAAGTACAAACAAAACACTGACA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[314-389] 2.1E-38 - T[390-454] 1.4E-32 |
| SMART |
Paired_dom (IPR001523) - T[321-445] 1.3E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[321-447] 60.013 |
| CDD |
Paired_dom (IPR001523) - T[323-447] 9.7072E-73 |
| Pfam |
Paired_dom (IPR001523) - T[323-445] 2.0E-67 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[324-445] 9.26E-37 |
| PRINTS |
Paired_dom (IPR001523) - T[325-340] 5.3E-39 - T[343-361] 5.3E-39 - T[363-380] 5.3E-39 - T[381-398] 5.3E-39 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[355-371] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 80.916 % | 237 | 3.78E-69 |
| PAX2_HUMAN | 81.25 % | 233 | 1.05E-67 |
| PAX8_HUMAN | 82.031 % | 235 | 6.66E-68 |