- Transcript 'KH2012:KH.L116.4.v1....' >
- Region 'REG00001224' >
- Transcript 'KH2012:KH.S1740.2.v1...' >
- Molecular Tool 'Tbx6b mRNA' >
- Transcript 'KH2012:KH.C12.116.v2...'
Transcript Model
Transcript Id
KH2012:KH.C12.116.v2.A.SL1-1
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
KhC12 [1,531,558 / 1,548,511]
Amino acid sequence
Length: 1,306
>KH.C12.116.v2.A.SL1-1
SESFRISLLFLKKICLVYVCYGMFNGLSKSRDLYVNLLNQAQADSIFPFQVFFKPLTYIP
TKVLSETETGCEEAFDFTSESIISLDAVQALSGVIKRREIRFSNWKVSEDESNVTMVLNW
QKNKENNADSKVDQQKKKLDSYTKKNDIVFIDGCKGLKMSEKQTLNVDADSQIVIENDKE
ITPEMAEIAKATVKRSAAESDNSHLPKVLKQEDILENTQPKTNELLLTVDQAGNANDHDH
EKQMLELVDAAAHATSYTEEVVVQEDAKTNTDIDNSSTGILGDLSNLGSDTTNGPVQIVV
EQGDIKGDYLDQEDYQIDTSSVEPEPQQTNTATVAAPQGVNPSMMSNLLHTAAAVAASQN
AAAATVQVIPGQAAGTIQLVPAADVQKTREMMAAGLSPQSVNQSGEESGKPSNQPVFTYL
VTSQGTLIAAHASDGSELISGSNGTKPKRKNTGRGRRLSKNSKSIVAKEEVGSEDGHGGG
VNQLGGMYVNGRPLPEPIRQRIVNLSHQGVRPCDISRQLRVSHGCVSKILARYYETGSIR
PGVIGGSKPKVATHDVVMRITEYKRENPTMFAWEIRDRLLADEVCSQETVPSVSSINRIV
RSKTSEFMKDNQKLSEQASLPSPLLNMQMIKGDRKRTNTAPSTSLNLVNQQANGNSLQNV
DLGGMQIIASGNDGNSGLAQYVSFAGSEGQSNKPVEQPTLQGSNSNDQNRIYSLSNLLGI
TPSQAALLASNPAAFTQAAAVIGATPTSSSNSNIVEPPKPSPSLPAVLASLPLGQQYELL
KTVGGDLVTVQQVEEKSQEQSNSRLISVQPNKATNIQPSNQQILVNAQGQIVTQTSMLAP
HGSQTRVISPSNVQQGGLYVTANGQVISTAAAQNLIVANLDQPVQSSTNSINLNQLSGVD
VMTSSVMTSSVRSTPTLTSPSNKTSKSSSITIGANQQGLVTLTQQQIQQLAAQGVVIQPA
PNHVSYQPVEQQNEKPDSEVVISESDCVTRTSEESVVVETVSNEKASEKVSLEQISHTNE
VNMTQEQQQLLKMLQSAILVKQEPSEESSNINQLLMATQQPGTAQLLSAAAALGAMQPSQ
TIAASSDTNTNSNNNNQHLVSSNPQVLTAAQLQQLTSNLQQQQQHQQQQQGIVQILSAAG
QLQHQQITNNQNSNNNNSQLQQQIAVQMLPATSGSNNNNNNNGGNSNLGRSGTQLQLASG
TLTELQPVSSLLNQLRTQPQQAVTFSVANTVAALQPPPATALPSLVLPPASVTIATTPSS
GIPNTLTQPFTTIYNEAWKMATNVQVTRAQSSHESASSPSSGEKKS
Nucleotide sequence
Length: 4,536
>KH2012:KH.C12.116.v2.A.SL1-1
AATCTGAAAGCTTCAGGATAAGTTTACTGTTTTTAAAGAAAATATGTTTGGTGTATGTTT
GCTACGGAATGTTTAATGGTCTTTCAAAATCAAGGGACCTTTATGTTAATCTACTAAATC
AAGCACAAGCAGATTCAATATTTCCATTTCAAGTCTTCTTTAAACCCTTAACTTACATTC
CTACAAAAGTCCTTTCAGAAACAGAAACCGGGTGTGAGGAAGCCTTTGATTTCACCTCTG
AATCTATTATTTCACTTGACGCTGTGCAAGCACTTTCAGGAGTTATAAAACGCCGTGAAA
TTCGTTTTAGTAATTGGAAAGTCTCTGAAGATGAGAGCAATGTTACTATGGTTTTGAATT
GGCAAAAAAATAAGGAAAATAACGCTGATTCAAAAGTAGATCAACAAAAGAAAAAGTTAG
ATTCATACACTAAAAAAAACGATATTGTGTTTATTGATGGTTGTAAAGGTTTGAAAATGT
CTGAAAAACAAACTTTAAACGTAGATGCCGATTCACAGATTGTTATTGAAAATGATAAAG
AAATTACTCCAGAAATGGCAGAGATAGCAAAGGCCACTGTTAAACGGAGTGCTGCAGAAA
GTGATAACTCGCATTTGCCAAAAGTTCTTAAGCAGGAAGATATTTTGGAAAACACTCAAC
CCAAAACGAATGAGCTTTTGCTTACTGTTGATCAAGCAGGGAATGCTAATGACCATGATC
ATGAAAAACAAATGTTGGAACTTGTTGATGCGGCAGCTCATGCAACATCCTATACAGAGG
AAGTAGTGGTACAAGAAGATGCTAAAACTAACACTGACATTGATAATAGCTCCACTGGCA
TTTTAGGAGATTTATCTAACCTTGGTAGTGATACCACAAATGGTCCGGTGCAAATTGTGG
TGGAGCAAGGTGATATTAAAGGAGATTACCTGGACCAGGAGGACTACCAGATTGATACCA
GCAGTGTAGAGCCAGAACCACAACAGACCAATACTGCAACGGTGGCTGCTCCACAAGGAG
TAAACCCTTCTATGATGAGTAATCTTCTCCACACAGCTGCTGCTGTTGCTGCTTCACAAA
ATGCAGCAGCAGCTACTGTTCAAGTGATCCCGGGGCAAGCTGCTGGTACAATACAACTTG
TTCCAGCAGCAGATGTTCAAAAAACTCGGGAAATGATGGCTGCTGGCTTGTCGCCACAAA
GTGTTAATCAGTCCGGTGAGGAAAGTGGGAAGCCATCTAATCAACCTGTGTTTACCTACT
TGGTTACTAGTCAAGGCACACTTATTGCAGCACATGCCAGTGATGGTAGTGAGTTGATAT
CCGGTTCAAATGGAACAAAACCTAAAAGAAAAAACACTGGCAGGGGTCGGAGATTAAGTA
AAAATTCCAAGTCCATTGTAGCAAAAGAAGAAGTTGGCAGTGAAGATGGCCATGGTGGAG
GAGTTAATCAACTTGGTGGAATGTATGTCAACGGAAGGCCTTTACCGGAACCAATAAGGC
AACGCATTGTCAATCTATCTCACCAAGGAGTTCGTCCGTGTGACATTTCTCGTCAGCTAC
GTGTATCGCATGGCTGTGTCAGCAAGATTTTAGCAAGGTATTATGAGACCGGAAGCATTC
GTCCTGGGGTTATTGGAGGTAGTAAGCCGAAAGTGGCAACACATGATGTGGTGATGCGGA
TAACGGAGTACAAACGTGAAAATCCTACCATGTTTGCTTGGGAAATACGTGACAGACTTT
TGGCTGATGAAGTATGTTCACAAGAAACTGTACCAAGTGTTTCATCAATAAACAGAATTG
TAAGAAGCAAAACTTCTGAATTTATGAAAGACAATCAGAAGCTTTCAGAACAAGCGAGTC
TGCCTTCTCCATTGTTAAACATGCAGATGATAAAAGGTGATAGAAAACGTACAAATACTG
CACCAAGCACCTCCCTTAATCTTGTAAACCAACAAGCAAACGGCAACTCGTTGCAAAATG
TGGACCTTGGTGGAATGCAGATTATTGCTTCTGGCAATGATGGCAACTCAGGGCTGGCAC
AATATGTCTCATTTGCAGGGTCAGAAGGACAAAGCAACAAACCTGTTGAACAACCTACTT
TGCAAGGATCCAACTCAAACGATCAGAATCGCATTTACAGTCTCAGCAACCTTCTTGGAA
TTACACCAAGCCAAGCTGCTCTTCTAGCAAGCAACCCTGCAGCTTTCACACAAGCTGCTG
CTGTGATTGGTGCAACCCCAACTTCATCATCCAATTCGAACATTGTTGAACCCCCCAAAC
CATCACCTTCTCTACCAGCTGTACTCGCCAGCTTACCCTTGGGTCAGCAATATGAGTTGC
TCAAAACTGTGGGTGGTGACCTTGTTACCGTGCAACAGGTGGAAGAGAAAAGTCAGGAGC
AGAGTAATTCCCGTCTTATATCAGTCCAGCCAAACAAAGCAACCAACATACAACCTTCTA
ATCAGCAGATATTAGTCAACGCTCAAGGACAAATTGTCACACAAACCAGTATGCTGGCCC
CCCATGGTAGCCAGACACGTGTTATATCGCCATCCAATGTTCAACAAGGTGGGCTTTATG
TGACAGCCAATGGTCAGGTGATTTCAACTGCTGCAGCTCAAAACTTAATTGTTGCAAACC
TTGACCAACCAGTGCAGTCCTCAACAAATTCCATAAATCTAAACCAACTGAGTGGTGTTG
ATGTTATGACATCATCAGTGATGACATCATCAGTTCGTTCGACACCCACCTTAACATCAC
CCAGCAACAAAACTTCCAAATCTTCCTCCATAACTATAGGTGCAAACCAGCAAGGGTTAG
TAACGCTCACCCAACAGCAAATACAACAGTTGGCAGCACAAGGTGTTGTAATTCAACCTG
CTCCGAACCATGTTTCATACCAACCAGTTGAGCAACAGAACGAGAAGCCAGACAGTGAGG
TGGTAATCTCAGAGAGTGATTGTGTTACAAGAACATCTGAAGAATCTGTCGTTGTGGAAA
CTGTATCTAATGAAAAAGCTTCAGAGAAAGTTTCACTTGAGCAAATATCTCACACAAATG
AAGTAAATATGACACAAGAACAACAACAGTTACTTAAAATGCTACAGAGTGCAATCCTTG
TCAAGCAAGAACCAAGTGAGGAGTCGTCCAACATAAACCAGCTACTCATGGCAACACAAC
AACCTGGAACTGCCCAGTTATTATCGGCAGCTGCTGCACTAGGTGCAATGCAACCCTCAC
AAACTATTGCAGCTTCATCTGACACAAACACCAACTCGAACAACAACAACCAACATCTTG
TATCTTCCAACCCTCAAGTTCTTACTGCAGCTCAATTACAACAACTTACTTCTAACTTGC
AACAACAACAACAACATCAACAGCAACAACAAGGAATTGTCCAGATTCTGTCAGCTGCTG
GCCAACTACAACATCAACAAATAACCAACAACCAGAACAGCAACAATAACAACAGTCAAC
TACAACAGCAAATAGCGGTGCAAATGCTTCCAGCAACTAGCGGCAGTAACAACAACAATA
ATAACAATGGTGGCAATTCAAATCTTGGAAGGTCTGGTACACAACTCCAACTTGCATCGG
GAACATTAACTGAGCTTCAACCTGTCAGTTCTCTTCTTAACCAACTCCGCACACAACCCC
AACAAGCTGTTACCTTTTCTGTTGCAAATACTGTTGCTGCACTTCAACCACCACCAGCTA
CAGCACTTCCATCACTTGTTCTGCCACCTGCCAGTGTAACTATAGCCACCACCCCATCTA
GTGGTATACCCAACACTCTTACACAACCGTTCACAACAATATACAATGAAGCATGGAAGA
TGGCTACCAATGTGCAAGTTACAAGAGCTCAATCATCACATGAGAGTGCTTCCTCTCCTT
CAAGTGGTGAAAAAAAGAGCTAAGACACTAAGCTGTTCAACATCTAAGTGCCTTTTACCT
GATGTAAATACCAGTGGCACATCTATAATACAGGTGTATTTATGGAACCAGTTAGGGCAG
TCTTCAAAATAACAAAATTTGTTTTGTTTTCTGACATTTGAAATTTGTTAACTCTGGAGT
TTACCACTCCTAATGCCAAAGAAGTCCATCTTGTGGTACGAGCCCGTCTTATTTTTAGTT
TATAAATCATCATTTCTCCATAAAGAACGTTAGTAAACAGTTATTTTTTTAAAGAAAACC
ATCATGCTGCTTGTACAGTTTAGTAAAGATAGTTGATTTTAAATTTTATTTTAAATCAAC
AAAGAAAAACATGCCTAACTATCTGCCGTCTTGTTAAAGTTCTTTAACCTTTCTGTTAAA
AATATATAAATTTTTTATTTAAGACCCGCTGCCATGGGGGTTTTGAGTTTTGCACTACCC
ATACATGGGGGTCTATTCTTCACCCGCTGCAACTACTATGGCCTGTCATTTAGCTTTTGT
TTGTTTTTGTAAATCCTGCCATTTTATTTTCCTTGTTCTGATTCTTGTTTTTTTTTTTGT
ATTTAGAAATTGTAAAGTACAAACAAAACACTGACA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[470-545] 2.4E-38 - T[546-610] 1.6E-32 |
| SMART |
Paired_dom (IPR001523) - T[477-601] 1.3E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[477-603] 60.013 |
| CDD |
Paired_dom (IPR001523) - T[479-603] 3.69159E-73 |
| Pfam |
Paired_dom (IPR001523) - T[479-601] 2.3E-67 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[480-601] 1.11E-36 |
| PRINTS |
Paired_dom (IPR001523) - T[481-496] 8.5E-39 - T[499-517] 8.5E-39 - T[519-536] 8.5E-39 - T[537-554] 8.5E-39 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[511-527] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 80.916 % | 235 | 1.86E-68 |
| PAX2_HUMAN | 81.25 % | 232 | 6.13E-67 |
| PAX8_HUMAN | 82.031 % | 234 | 3.57E-67 |