Transcript Model
Transcript Id
KH2012:KH.C11.82.v3.B.SL2-1
Possible name(s)
HNRNPL; HNRNPLL
Gene model
Location
KhC11 [4,531,507 / 4,542,463]
Amino acid sequence
Length: 440
>KH.C11.82.v3.B.SL2-1
NCKMSFEEHQVKRRRLSENGSELKQEDFSSHEPPHERPDRENKFSREREMADQPNKVLLF
TVVNAVYPITTDVLHMICEPCGEVQRIVIFRKRGVQAMIEFGSIQDAQRAKASLNGADIY
SGCCTLKIEWAKPARLNVYKNDDETWDYTGAVDEPNMPMQQPALLGDAPAGFSNPPPYRT
GERQRMPVPAQRGRGGMRGRPPVLHARPRRPNPPLMNTNDYGPPMDGNTTVLMVYGLNPE
KMTCDRVFNILCLYGNVMKVKFLKSKPGTAMVQMGDPSAVGRAISNLSGMKFFDEKLVLA
PSKQLYLTDTGPVGDLPNGTPAQVDFGNSRNNRFQTNEQAAKNRIQNPAKVLHYYNAPLE
LNEEKMKEICQEFDLALPVKFTPFKTRSERSSSGLMEFDTKAQAMEVLTYINHYKLDNPA
GRFPYILKLCFSTASTATRD
Nucleotide sequence
Length: 1,484
>KH2012:KH.C11.82.v3.B.SL2-1
AAACTGCAAAATGTCGTTTGAAGAACACCAAGTAAAGCGTAGAAGGCTGAGTGAAAATGG
TTCAGAACTTAAACAAGAAGACTTCAGCTCTCATGAGCCACCCCATGAAAGGCCAGATAG
GGAGAATAAATTTTCACGAGAGCGCGAAATGGCGGACCAACCAAATAAAGTTCTCCTGTT
CACTGTGGTCAATGCAGTTTACCCAATCACCACGGATGTTTTGCACATGATATGTGAACC
ATGCGGAGAAGTCCAAAGGATTGTTATATTCAGGAAACGTGGAGTGCAAGCCATGATTGA
GTTCGGTTCAATCCAAGATGCACAGCGGGCAAAAGCTTCGCTAAATGGAGCCGACATTTA
CTCTGGTTGTTGCACCTTGAAGATTGAATGGGCAAAGCCAGCAAGATTAAATGTTTATAA
GAATGATGATGAAACTTGGGACTACACAGGAGCTGTTGACGAACCCAACATGCCAATGCA
GCAACCTGCATTACTGGGCGACGCCCCTGCTGGTTTCTCCAACCCACCACCTTATAGAAC
AGGTGAGAGGCAAAGGATGCCGGTCCCTGCACAGCGTGGAAGGGGAGGTATGAGGGGAAG
ACCTCCGGTGTTGCATGCTAGACCCCGCAGACCAAATCCTCCTCTGATGAATACAAATGA
CTATGGGCCCCCCATGGATGGCAACACAACAGTTCTCATGGTTTACGGACTTAACCCTGA
AAAAATGACTTGCGACCGAGTTTTCAATATTTTATGTTTGTATGGCAATGTTATGAAGGT
GAAATTCTTGAAAAGCAAACCAGGAACAGCCATGGTACAGATGGGAGATCCAAGTGCAGT
AGGGCGGGCAATTTCAAATCTATCAGGAATGAAATTTTTTGATGAGAAACTTGTACTTGC
ACCATCAAAGCAACTTTATCTAACGGACACTGGACCAGTTGGTGACCTCCCTAATGGAAC
GCCTGCTCAAGTAGATTTTGGAAACTCAAGAAACAACAGGTTCCAAACCAATGAACAAGC
TGCTAAGAACCGAATACAGAACCCAGCCAAGGTATTGCATTATTACAATGCTCCACTTGA
GTTAAATGAGGAAAAAATGAAAGAGATATGCCAAGAGTTTGATTTGGCACTTCCTGTCAA
GTTTACTCCATTTAAGACAAGAAGTGAACGCAGCTCATCTGGTTTAATGGAGTTCGATAC
AAAAGCTCAGGCCATGGAAGTATTGACGTATATCAACCATTATAAACTGGATAATCCAGC
CGGCAGATTCCCTTACATACTCAAGCTTTGTTTCTCAACTGCTAGCACAGCAACCCGAGA
CTGAATAGAATAACAAGGCTGTAAATAGATGATTCAGAATGAACTTTGACCAACTTTCAA
CTGTTGCAGCACCAATTTGCCGACGGTGCAAAACTTTGTGTCGTATTGCTCAGTAATTAA
AAATGTTTGTTTTCAAAACATTTCAAATAAAGAACTTTAATGTA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[51-152] 1.5E-37 - T[227-327] 1.0E-25 - T[338-431] 3.1E-31 |
| TIGRFAM |
HnRNP-L/PTB (IPR006536) - T[51-435] 6.6E-122 |
| SMART |
RRM_dom (IPR000504) - T[57-127] 2.1E-4 - T[231-300] 7.3E-6 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[64-146] 2.58E-16 - T[180-301] 9.91E-13 |
| Pfam |
RRM_dom (IPR000504) - T[68-120] 3.7E-6 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[230-304] 9.729 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PTBP2_HUMAN | 29.759 % | 134 | 1.95E-34 |
| HNRPL_HUMAN | 54.167 % | 409 | 1.84E-138 |
| HNRLL_HUMAN | 46.114 % | 335 | 3.42E-110 |