- Transcript 'KH2012:KH.C11.82.v3....'
Transcript Model
Transcript Id
KH2012:KH.C11.82.v3.B.nonSL5-1
Possible name(s)
HNRNPL; HNRNPLL
Gene model
Location
KhC11 [4,531,433 / 4,542,463]
Amino acid sequence
Length: 442
>KH.C11.82.v3.B.nonSL5-1
NRNCKMSFEEHQVKRRRLSENGSELKQEDFSSHEPPHERPDRENKFSREREMADQPNKVL
LFTVVNAVYPITTDVLHMICEPCGEVQRIVIFRKRGVQAMIEFGSIQDAQRAKASLNGAD
IYSGCCTLKIEWAKPARLNVYKNDDETWDYTGAVDEPNMPMQQPALLGDAPAGFSNPPPY
RTGERQRMPVPAQRGRGGMRGRPPVLHARPRRPNPPLMNTNDYGPPMDGNTTVLMVYGLN
PEKMTCDRVFNILCLYGNVMKVKFLKSKPGTAMVQMGDPSAVGRAISNLSGMKFFDEKLV
LAPSKQLYLTDTGPVGDLPNGTPAQVDFGNSRNNRFQTNEQAAKNRIQNPAKVLHYYNAP
LELNEEKMKEICQEFDLALPVKFTPFKTRSERSSSGLMEFDTKAQAMEVLTYINHYKLDN
PAGRFPYILKLCFSTASTATRD
Nucleotide sequence
Length: 1,558
>KH2012:KH.C11.82.v3.B.nonSL5-1
ATATTTGCAAATTTGCAGATTTAACTAGAAATACTGTATGTTATTGTAATTGTTCTATTT
GCTACATAAAACAGAAACTGCAAAATGTCGTTTGAAGAACACCAAGTAAAGCGTAGAAGG
CTGAGTGAAAATGGTTCAGAACTTAAACAAGAAGACTTCAGCTCTCATGAGCCACCCCAT
GAAAGGCCAGATAGGGAGAATAAATTTTCACGAGAGCGCGAAATGGCGGACCAACCAAAT
AAAGTTCTCCTGTTCACTGTGGTCAATGCAGTTTACCCAATCACCACGGATGTTTTGCAC
ATGATATGTGAACCATGCGGAGAAGTCCAAAGGATTGTTATATTCAGGAAACGTGGAGTG
CAAGCCATGATTGAGTTCGGTTCAATCCAAGATGCACAGCGGGCAAAAGCTTCGCTAAAT
GGAGCCGACATTTACTCTGGTTGTTGCACCTTGAAGATTGAATGGGCAAAGCCAGCAAGA
TTAAATGTTTATAAGAATGATGATGAAACTTGGGACTACACAGGAGCTGTTGACGAACCC
AACATGCCAATGCAGCAACCTGCATTACTGGGCGACGCCCCTGCTGGTTTCTCCAACCCA
CCACCTTATAGAACAGGTGAGAGGCAAAGGATGCCGGTCCCTGCACAGCGTGGAAGGGGA
GGTATGAGGGGAAGACCTCCGGTGTTGCATGCTAGACCCCGCAGACCAAATCCTCCTCTG
ATGAATACAAATGACTATGGGCCCCCCATGGATGGCAACACAACAGTTCTCATGGTTTAC
GGACTTAACCCTGAAAAAATGACTTGCGACCGAGTTTTCAATATTTTATGTTTGTATGGC
AATGTTATGAAGGTGAAATTCTTGAAAAGCAAACCAGGAACAGCCATGGTACAGATGGGA
GATCCAAGTGCAGTAGGGCGGGCAATTTCAAATCTATCAGGAATGAAATTTTTTGATGAG
AAACTTGTACTTGCACCATCAAAGCAACTTTATCTAACGGACACTGGACCAGTTGGTGAC
CTCCCTAATGGAACGCCTGCTCAAGTAGATTTTGGAAACTCAAGAAACAACAGGTTCCAA
ACCAATGAACAAGCTGCTAAGAACCGAATACAGAACCCAGCCAAGGTATTGCATTATTAC
AATGCTCCACTTGAGTTAAATGAGGAAAAAATGAAAGAGATATGCCAAGAGTTTGATTTG
GCACTTCCTGTCAAGTTTACTCCATTTAAGACAAGAAGTGAACGCAGCTCATCTGGTTTA
ATGGAGTTCGATACAAAAGCTCAGGCCATGGAAGTATTGACGTATATCAACCATTATAAA
CTGGATAATCCAGCCGGCAGATTCCCTTACATACTCAAGCTTTGTTTCTCAACTGCTAGC
ACAGCAACCCGAGACTGAATAGAATAACAAGGCTGTAAATAGATGATTCAGAATGAACTT
TGACCAACTTTCAACTGTTGCAGCACCAATTTGCCGACGGTGCAAAACTTTGTGTCGTAT
TGCTCAGTAATTAAAAATGTTTGTTTTCAAAACATTTCAAATAAAGAACTTTAATGTA
| TIGRFAM |
HnRNP-L/PTB (IPR006536) - T[53-437] 6.6E-122 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[53-154] 1.5E-37 - T[229-329] 1.0E-25 - T[340-433] 3.1E-31 |
| SMART |
RRM_dom (IPR000504) - T[59-129] 2.1E-4 - T[233-302] 7.3E-6 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[66-148] 2.58E-16 - T[182-303] 1.0E-12 |
| Pfam |
RRM_dom (IPR000504) - T[70-122] 3.7E-6 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[232-306] 9.729 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PTBP2_HUMAN | 29.759 % | 134 | 1.71E-34 |
| HNRPL_HUMAN | 54.167 % | 409 | 2.5E-138 |
| HNRLL_HUMAN | 46.114 % | 334 | 4.79E-110 |