- Transcript 'KH2012:KH.C1.17.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C1.17.v2.A.ND2-1
Possible name(s)
PABPC1; PABPC1L; TRNAU1AP
Gene model
Location
KhC1 [3,215,468 / 3,221,174]
Amino acid sequence
Length: 328
>KH.C1.17.v2.A.ND2-1
KINTMSRSLWMGDLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSEAE
AERVLKLVNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDFFL
KRYRSVKGAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATPKG
KMAPSTNSSTTDTTTASIPTAYDDATAYAQQLLQMQQYTDQYKYYQQYCDYYNYQQQYSY
YQQQAQNSQAYARANVEQYASTEHYQASRLHQQENNNNKLEDPNPAFNKEFENAAYIAQK
TLLIDCLGSHWQPIDSYTSKIPSYSIRS
Nucleotide sequence
Length: 1,463
>KH2012:KH.C1.17.v2.A.ND2-1
GTTTGCGAGGGTTAGGATATAGCAGTAGTTTTATCTGCAAACATCAGTCAAAACGATTGG
GTTTTTCGATTCTCTTGTGTGTTTTCAGTTTTTCTGCTGTGTTGGGCTTTAAAAGATAAA
CACCATGTCAAGATCACTGTGGATGGGAGACTTGGAGCCGTATATGGACGAGACTTTTGT
AAACAAAGCATTTCTGCAAGTAAGCCAACCTGTGTCCGTGAAAGTTATCAGAAGGAAGGA
CAATGGCCTGCCAGCGGGTTATTGTTTTATAGAGTTCCCAAGTGAAGCTGAAGCTGAGAG
AGTGCTGAAACTTGTCAACGGAACAACCATTAATGGAAGTAATCCTCCAAAGAGATTTCG
ACTGAACAGATCTCAAGCTGGGAAAATGTGGGATATTGGACCATCATTTTCAATATTTGT
TGGTGACCTCGATGCCACAGTAACAGATGATAAACTAGAAGACTTTTTCTTGAAGAGATA
TCGCTCGGTGAAAGGGGCAAAGATAATGTATGAAGAAGGAGGGATTTCAAGAGGATATGG
ATTTGTTCGGTTTAGTGATGAAGCTGAACAGAAAAGAGCTTTACAAGAAATGCAAGGGAT
TAGGGGTCTTGGGGCAAAACCTATTCGTGTTAGTGTCGCTACACCAAAAGGAAAAATGGC
CCCAAGTACCAACAGTAGCACAACAGACACAACCACTGCCAGTATACCTACAGCTTATGA
TGATGCTACAGCATACGCACAACAGTTGTTACAAATGCAGCAATACACTGACCAGTATAA
ATACTACCAACAGTATTGTGACTATTACAACTATCAGCAACAATACAGCTACTACCAACA
GCAAGCACAAAACAGCCAGGCATATGCGAGAGCTAATGTTGAGCAATATGCTTCAACCGA
GCACTATCAAGCCAGCAGGTTGCACCAGCAAGAAAACAACAACAATAAACTTGAGGACCC
CAATCCTGCATTCAACAAAGAATTCGAAAACGCTGCATACATTGCCCAAAAGACTTTACT
AATTGATTGTCTAGGTAGCCACTGGCAACCAATAGACTCCTATACTTCTAAAATCCCAAG
TTATAGCATTAGATCCTGACTTGATAAAACTATTAACATTTTTGAACTAATTTCCACATT
TTTCGTTGCCGCTTTTTTAAGACGTTATATTAACGCTAAGATAATAAGAAATGAGCTGGT
GTACAGTTTTATGTAATATTCCATACTGCACATATACGTTGTTATATTTTCTTGGCCGCA
TTTTTGGTTTTTGTTAAGTTTTTGTTATTGTTTCAAAAAAAAACGCTATACTTCGGAAAA
GCGTATTTTTAAAAGGTTTTGTTTCGGGCAATATTAGACGTTTCTGCCGCCGTTTTTAGT
TACTGTTTCTACCAAGCGTGGTAACACCGCCAAATTATCATCTATACAAACCATTTTCAA
TTAAAACTCTCATGGCCCCTTCT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[5-87] 4.4E-19 - T[98-175] 2.2E-21 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[6-179] 4.93E-33 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[7-89] 12.236 - T[99-178] 17.012 |
| SMART |
RRM_dom (IPR000504) - T[8-82] 2.3E-9 - T[100-174] 4.3E-15 |
| Pfam |
RRM_dom (IPR000504) - T[9-76] 9.6E-10 - T[101-169] 1.1E-13 |
| CDD |
SECp43_RRM2 (IPR034510) - T[98-179] 9.4764E-50 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSAP1_HUMAN | 39.441 % | 223 | 9.47E-72 |
