- Transcript 'KH2012:KH.C11.689.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.689.v1.B.SL1-1
Possible name(s)
ALX4; VSX1; VSX2
Gene model
Location
KhC11 [4,100,492 / 4,103,663]
Amino acid sequence
Length: 250
>KH.C11.689.v1.B.SL1-1
SVMITSLKRGCQQSPVRDDVIYDVSSDFSDSASVQEKSSPNLNSSSKTREEEIGSFHIVR
LLDNSATHSRKVAENNRHERMHLSSDHLNGPVQYSKDFGRVEGSEEAPPVQHLPLPASTN
FQPQATTSPIEQNRFKSDETEPAAKKRKLSSDGTKEVTQSRNNSKELSDKLKKRRSRTIF
TSAQLEHLEKAFDLAHYPDAETREKLAKNANLQEDRIQVWFQNRRAKWRKRENCWGKSSV
MAEYGLYGA+
Nucleotide sequence
Length: 753
>KH2012:KH.C11.689.v1.B.SL1-1
AATAAAGTGTGATGATTACGTCACTCAAAAGAGGTTGCCAGCAGTCTCCAGTGCGTGATG
ACGTAATCTATGACGTATCATCGGACTTTTCAGATTCTGCCAGCGTGCAGGAGAAATCGA
GCCCAAACTTGAATAGTTCGTCGAAAACACGGGAGGAAGAAATCGGGTCCTTTCATATCG
TAAGACTGTTGGATAATTCCGCGACCCACAGCAGAAAAGTGGCGGAAAATAATCGCCATG
AACGAATGCACTTAAGCAGTGATCATCTAAATGGTCCTGTGCAATACTCGAAGGATTTTG
GACGCGTGGAAGGATCGGAAGAAGCGCCTCCAGTTCAGCATCTTCCGCTTCCCGCATCCA
CGAACTTCCAACCCCAAGCAACAACTTCGCCCATCGAGCAAAACCGGTTCAAATCGGATG
AAACCGAACCTGCAGCCAAAAAACGAAAACTTTCTTCGGATGGTACAAAAGAAGTTACCC
AATCTAGAAACAACAGTAAGGAACTCAGTGATAAACTAAAGAAACGACGTAGCAGAACAA
TTTTCACAAGCGCTCAACTTGAACATTTGGAAAAAGCATTTGATCTTGCTCATTACCCGG
ATGCAGAAACGAGAGAAAAATTAGCGAAAAACGCAAATTTACAAGAAGACAGAATTCAGG
TTTGGTTTCAGAACCGCCGCGCAAAATGGCGGAAACGAGAGAATTGTTGGGGCAAGAGTA
GCGTTATGGCAGAATACGGCTTGTACGGTGCAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[171-233] 1.84E-24 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[171-231] 20.698 |
| SMART |
Homeobox_dom (IPR001356) - T[173-235] 6.0E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[174-230] 1.9E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[174-232] 5.31294E-21 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[206-229] . |
| ProSiteProfiles |
CVC (IPR023339) - T[233-249] 8.924 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ALX4_HUMAN | 67.692 % | 95.5 | 9.84E-23 |
| VSX1_HUMAN | 75 % | 128 | 4.93E-35 |
| VSX2_HUMAN | 79.167 % | 128 | 3.11E-35 |
