Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.165.v5.A.SL2-1

Possible name(s)

VAMP1; VAMP2; VAMP3

Gene model

KH2012:KH.C1.165

Location

KhC1 [126,601 / 137,334]

Sequences

Amino acid sequence

Length: 178

>KH.C1.165.v5.A.SL2-1
HNCIKMSYGGTSNYGGPAAPTGGSSQASKKLQQTQAQVDDVVDIMRTNVDKVLERDQKLS
ELDDRADALQQGASQFETQAAKLKRKYWWKNCKMIIMLSVVILVIVAVIINVGDPHHRYT
CYYHYYSCLLLHEIIPSIRCHPNTEENLSINMDTILMTVAGSLPRIIQLSPATLLSLT

Nucleotide sequence

Length: 1,395

>KH2012:KH.C1.165.v5.A.SL2-1
AAGTAACTGTTCAGTAGAAAGTTCCAGTATTTCAATAATTGTAAAGATCAGCTTGATAAC
TAAGTTGGGTTTTTGATACTGATTGTTTTGTGTCATATATATCTGGATTGGAGTACATCT
CATAGTACCAACTGAATAACATAACTGCATAAAAATGTCTTACGGAGGTACATCTAACTA
TGGAGGTCCAGCTGCACCAACTGGAGGTTCATCCCAAGCTTCCAAGAAACTCCAGCAAAC
ACAAGCACAAGTGGATGATGTTGTGGACATCATGAGGACAAATGTGGACAAAGTGCTCGA
GAGGGATCAGAAGTTATCTGAGCTAGATGACAGGGCAGATGCATTACAGCAAGGCGCGTC
CCAGTTTGAGACTCAAGCTGCAAAACTGAAGAGAAAGTACTGGTGGAAGAATTGCAAGAT
GATAATCATGCTATCAGTAGTTATACTGGTCATAGTTGCAGTTATTATTAATGTGGGCGA
TCCTCATCATCGTTATACTTGTTATTATCATTATTATAGTTGTTTACTTCTCCACGAAAT
AATCCCCAGTATCCGTTGTCACCCAAACACAGAAGAAAACTTAAGCATAAACATGGACAC
AATACTGATGACTGTTGCTGGCTCACTACCGAGAATCATTCAACTATCACCAGCAACATT
ATTATCTTTAACCTAAGTGTATTTTCCACTCAACATTCAATTGTAAAGTACAAGTGTATG
GTTTAGTTAGTGTCGTTTCCTTGTGCTTGCAGTGTATGCCCAAGATTGTATCTTTCATAC
TTTTACCCAAAAGTATCTATATAAACATGTTAATATTATTGTACTGACCATTCGTGCAAT
TTCGTTACGTTGCTAGGTATCTATGCTTACATTTGCACACAATTTCAACCAAGTCGAAAA
GCTTTAAAATCACTTAATGCAAATTCTATTTATAGATGAGAAAAAATCAATATTTTCCAT
TCGAGAGCACATACGCTTTGTGCTTTTATCAAGCAGGTAGAATAATCGTTGTGTTCAGTA
TAATTGTTACTCTGATAACATATGTAGTTAAAAACTTCTGTTTAAGTCAAGCTCCGCATA
GCGTAACAGTATTACTCGCAAAACATGTAGTGAACACTCATTGTAGTTATTATGCAGACG
ATTTTGTCGCTGGAGGTTCCATACCGGTTTCAAGCTGTTATTTCGAATCGGTAGTAACTT
CTTACTGACGTTAATTAGTTACGGTACACGGCAAGGCATGTTATTTTGCTTGTACATATG
AAGTTTACTTTGAGCAATCGTACTAAAACTAAACCTACAATTGTCTTGCAAATGTAGTTG
TGTGGCTAAATGTTCAGACTGTAATCTGTTACTTGAGTATTTTCGCTTCACTTACACTTA
CGTCAAATTACCAAA

InterProScan

Pfam	Synaptobrevin (IPR001388) - T[28-111] 1.1E-32
ProSiteProfiles	Synaptobrevin (IPR001388) - T[30-90] 18.683
PRINTS	Synaptobrevin (IPR001388) - T[35-54] 4.2E-30 - T[55-74] 4.2E-30 - T[91-110] 4.2E-30
ProSitePatterns	Synaptobrevin (IPR001388) - T[48-67] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
VAMP3_HUMAN	81.013 %	132	8.16E-41
VAMP2_HUMAN	83.784 %	132	1.41E-40
VAMP1_HUMAN	80 %	132	2.79E-40